PLMD::analysis Namespace Reference

Classes
class	AnalysisBase
	This is the abstract base class to use for implementing new methods for analyzing the trajectory. More...
class	Average
	Provides the keyword AVERAGE . More...
class	AverageVessel
class	Committor
	Provides the keyword COMMITTOR . More...
class	DataCollectionObject
class	EuclideanDissimilarityMatrix
	Provides the keyword EUCLIDEAN_DISSIMILARITIES . More...
class	FarthestPointSampling
	Provides the keyword LANDMARK_SELECT_FPS . More...
class	Histogram
	Provides the keyword HISTOGRAM . More...
class	LandmarkSelectionBase
class	LandmarkStaged
	Provides the keyword LANDMARK_SELECT_STAGED . More...
class	OutputColvarFile
	Provides the keyword OUTPUT_ANALYSIS_DATA_TO_COLVAR . More...
class	OutputPDBFile
	Provides the keyword OUTPUT_ANALYSIS_DATA_TO_PDB . More...
class	PrintDissimilarityMatrix
	Provides the keyword PRINT_DISSIMILARITY_MATRIX . More...
class	ReadAnalysisFrames
	Provides the keyword COLLECT_FRAMES . More...
class	ReadDissimilarityMatrix
	Provides the keyword READ_DISSIMILARITY_MATRIX . More...
class	ReselectLandmarks
	Provides the keyword RESELECT_LANDMARKS . More...
class	SelectRandomFrames
	Provides the keyword LANDMARK_SELECT_RANDOM . More...
class	SelectWithStride
	Provides the keyword LANDMARK_SELECT_STRIDE . More...
class	WhamHistogram
	Provides the keyword WHAM_HISTOGRAM . More...
class	WhamWeights
	Provides the keyword WHAM_WEIGHTS . More...