Classes providing input directives

Classes
class	PLMD::bias::ABMD
	Provides the keyword ABMD . More...
class	PLMD::mapping::AdaptivePath
	Provides the keyword ADAPTIVE_PATH . More...
class	PLMD::multicolvar::AlphaBeta
	Provides the keyword ALPHABETA . More...
class	PLMD::secondarystructure::AlphaRMSD
	Provides the keyword ALPHARMSD . More...
class	PLMD::colvar::Angle
	Provides the keyword ANGLE . More...
class	PLMD::multicolvar::Angles
	Provides the keyword ANGLES . More...
class	ANN
	Provides the keyword ANN . More...
class	PLMD::secondarystructure::AntibetaRMSD
	Provides the keyword ANTIBETARMSD . More...
class	PLMD::analysis::Average
	Provides the keyword AVERAGE . More...
class	PLMD::ves::BF_Chebyshev
	Provides the keyword BF_CHEBYSHEV . More...
class	PLMD::ves::BF_Combined
	Provides the keyword BF_COMBINED . More...
class	PLMD::ves::BF_Cosine
	Provides the keyword BF_COSINE . More...
class	PLMD::ves::BF_CubicBsplines
	Provides the keyword BF_CUBIC_B_SPLINES . More...
class	PLMD::ves::BF_Custom
	Provides the keyword BF_CUSTOM . More...
class	PLMD::ves::BF_Fourier
	Provides the keyword BF_FOURIER . More...
class	PLMD::ves::BF_Gaussians
	Provides the keyword BF_GAUSSIANS . More...
class	PLMD::ves::BF_Legendre
	Provides the keyword BF_LEGENDRE . More...
class	PLMD::ves::BF_Powers
	Provides the keyword BF_POWERS . More...
class	PLMD::ves::BF_Sine
	Provides the keyword BF_SINE . More...
class	PLMD::ves::BF_Wavelets
	Provides the keyword BF_WAVELETS . More...
class	PLMD::bias::BiasValue
	Provides the keyword BIASVALUE . More...
class	PLMD::crystallization::BondOrientation
	Provides the keyword BOND_DIRECTIONS . More...
class	PLMD::multicolvar::Bridge
	Provides the keyword BRIDGE . More...
class	PLMD::isdb::Caliber
	Provides the keyword CALIBER . More...
class	PLMD::colvar::Cell
	Provides the keyword CELL . More...
class	PLMD::vatom::Center
	Provides the keyword CENTER . More...
class	PLMD::multicolvar::CenterOfMultiColvar
	Provides the keyword CENTER_OF_MULTICOLVAR . More...
class	PLMD::dimred::ClassicalMultiDimensionalScaling
	Provides the keyword CLASSICAL_MDS . More...
class	PLMD::adjmat::ClusterDiameter
	Provides the keyword CLUSTER_DIAMETER . More...
class	PLMD::adjmat::ClusterDistribution
	Provides the keyword CLUSTER_DISTRIBUTION . More...
class	PLMD::adjmat::ClusterProperties
	Provides the keyword CLUSTER_PROPERTIES . More...
class	PLMD::adjmat::ClusterSize
	Provides the keyword CLUSTER_NATOMS . More...
class	PLMD::adjmat::ClusterWithSurface
	Provides the keyword CLUSTER_WITHSURFACE . More...
class	PLMD::colvar::ColvarFake
	Provides the keyword FAKE . More...
class	PLMD::function::Combine
	Provides the keyword COMBINE . More...
class	PLMD::analysis::Committor
	Provides the keyword COMMITTOR . More...
class	PLMD::colvar::Constant
	Provides the keyword CONSTANT . More...
class	PLMD::adjmat::ContactAlignedMatrix
	Provides the keyword ALIGNED_MATRIX . More...
class	PLMD::colvar::ContactMap
	Provides the keyword CONTACTMAP . More...
class	PLMD::adjmat::ContactMatrix
	Provides the keyword CONTACT_MATRIX . More...
class	PLMD::gridtools::ConvertToFES
	Provides the keyword CONVERT_TO_FES . More...
class	PLMD::colvar::Coordination
	Provides the keyword COORDINATION . More...
class	PLMD::multicolvar::CoordinationNumbers
	Provides the keyword COORDINATIONNUMBER . More...
class	PLMD::isdb::CS2Backbone
	Provides the keyword CS2BACKBONE . More...
class	PLMD::function::Custom
	Provides the keyword CUSTOM . More...
class	PLMD::generic::Debug
	Provides the keyword DEBUG . More...
class	PLMD::multicolvar::Density
	Provides the keyword DENSITY . More...
class	PLMD::adjmat::DFSClustering
	Provides the keyword DFSCLUSTERING . More...
class	PLMD::colvar::DHEnergy
	Provides the keyword DHENERGY . More...
class	PLMD::multicolvar::DihedralCorrelation
	Provides the keyword DIHCOR . More...
class	PLMD::colvar::Dimer
	Provides the keyword <a href="../../user-doc/html/_"_d_i_m_e_r.html"> "DIMER . More...
class	PLMD::colvar::Dipole
	Provides the keyword DIPOLE . More...
class	PLMD::colvar::Distance
	Provides the keyword DISTANCE . More...
class	PLMD::multicolvar::DistanceFromContour
	Provides the keyword DISTANCE_FROM_CONTOUR . More...
class	PLMD::multicolvar::Distances
	Provides the keyword DISTANCES . More...
class	PLMD::colvar::DRMSD
	Provides the keyword DRMSD . More...
class	PLMD::generic::DumpAtoms
	Provides the keyword DUMPATOMS . More...
class	PLMD::gridtools::DumpCube
	Provides the keyword DUMPCUBE . More...
class	PLMD::generic::DumpDerivatives
	Provides the keyword DUMPDERIVATIVES . More...
class	PLMD::generic::DumpForces
	Provides the keyword DUMPFORCES . More...
class	PLMD::adjmat::DumpGraph
	Provides the keyword DUMPGRAPH . More...
class	PLMD::gridtools::DumpGrid
	Provides the keyword DUMPGRID . More...
class	PLMD::generic::DumpMassCharge
	Provides the keyword DUMPMASSCHARGE . More...
class	PLMD::multicolvar::DumpMultiColvar
	Provides the keyword DUMPMULTICOLVAR . More...
class	PLMD::generic::DumpProjections
	Provides the keyword DUMPPROJECTIONS . More...
class	DynamicReferenceRestraining
	Provides the keyword <a href="../../user-doc/html/_"_d_r_r.html"> "DRR . More...
class	PLMD::opes::ECVcustom
	Provides the keyword ECV_CUSTOM . More...
class	PLMD::opes::ECVlinear
	Provides the keyword ECV_LINEAR . More...
class	PLMD::opes::ECVmultiThermal
	Provides the keyword ECV_MULTITHERMAL . More...
class	PLMD::opes::ECVmultiThermalBaric
	Provides the keyword ECV_MULTITHERMAL_MULTIBARIC . More...
class	PLMD::opes::ECVumbrellasFile
	Provides the keyword ECV_UMBRELLAS_FILE . More...
class	PLMD::opes::ECVumbrellasLine
	Provides the keyword ECV_UMBRELLAS_LINE . More...
class	PLMD::eds::EDS
	Provides the keyword <a href="../../user-doc/html/_"_e_d_s.html"> "EDS . More...
class	PLMD::colvar::EEFSolv
	Provides the keyword EEFSOLV . More...
class	PLMD::generic::EffectiveEnergyDrift
	Provides the keyword EFFECTIVE_ENERGY_DRIFT . More...
class	PLMD::isdb::EMMI
	Provides the keyword EMMI . More...
class	PLMD::generic::EndPlumed
	Provides the keyword ENDPLUMED . More...
class	PLMD::colvar::Energy
	Provides the keyword ENERGY . More...
class	PLMD::function::Ensemble
	Provides the keyword ENSEMBLE . More...
class	PLMD::crystallization::EnvironmentSimilarity
	Provides the keyword ENVIRONMENTSIMILARITY . More...
class	PLMD::colvar::ERMSD
	Provides the keyword ERMSD . More...
class	PLMD::analysis::EuclideanDissimilarityMatrix
	Provides the keyword EUCLIDEAN_DISSIMILARITIES . More...
class	PLMD::bias::ExtendedLagrangian
	Provides the keyword EXTENDED_LAGRANGIAN . More...
class	PLMD::bias::External
	Provides the keyword EXTERNAL . More...
class	PLMD::colvar::ExtraCV
	Provides the keyword EXTRACV . More...
class	PLMD::analysis::FarthestPointSampling
	Provides the keyword LANDMARK_SELECT_FPS . More...
class	PLMD::crystallization::Fccubic
	Provides the keyword FCCUBIC . More...
class	PLMD::multicolvar::FilterBetween
	Provides the keyword MFILTER_BETWEEN . More...
class	PLMD::multicolvar::FilterLess
	Provides the keyword MFILTER_LESS . More...
class	PLMD::multicolvar::FilterMore
	Provides the keyword MFILTER_MORE . More...
class	PLMD::gridtools::FindContour
	Provides the keyword FIND_CONTOUR . More...
class	PLMD::gridtools::FindContourSurface
	Provides the keyword FIND_CONTOUR_SURFACE . More...
class	PLMD::gridtools::FindSphericalContour
	Provides the keyword FIND_SPHERICAL_CONTOUR . More...
class	PLMD::fisst::FISST
	Provides the keyword FISST . More...
class	PLMD::generic::FitToTemplate
	Provides the keyword FIT_TO_TEMPLATE . More...
class	PLMD::vatom::FixedAtom
	Provides the keyword FIXEDATOM . More...
class	PLMD::generic::Flush
	Provides the keyword FLUSH . More...
class	PLMD::gridtools::FourierTransform
	Provides the keyword FOURIER_TRANSFORM . More...
class	PLMD::isdb::FretEfficiency
	Provides the keyword FRET . More...
class	PLMD::function::FuncPathGeneral
	Provides the keyword <a href="../../user-doc/html/_"_f_u_n_c_p_a_t_h_g_e_n_e_r_a_l.html"> "FUNCPATHGENERAL . More...
class	PLMD::function::FuncPathMSD
	Provides the keyword FUNCPATHMSD . More...
class	PLMD::function::FuncSumHills
	Provides the keyword FUNCSUMHILLS . More...
class	PLMD::funnel::Funnel
	Provides the keyword FUNNEL . More...
class	PLMD::funnel::FUNNEL_PS
	Provides the keyword FUNNEL_PS . More...
class	PLMD::membranefusion::fusionPoreExpansionP
	Provides the keyword <a href="../../user-doc/html/_"_f_u_s_i_o_n_p_o_r_e_e_x_p_a_n_s_i_o_n_p.html"> "FUSIONPOREEXPANSIONP . More...
class	PLMD::membranefusion::fusionPoreNucleationP
	Provides the keyword <a href="../../user-doc/html/_"_f_u_s_i_o_n_p_o_r_e_n_u_c_l_e_a_t_i_o_n_p.html"> "FUSIONPORENUCLEATIONP . More...
class	PLMD::colvar::GHBFIX
	Provides the keyword GHBFIX . More...
class	PLMD::vatom::Ghost
	Provides the keyword GHOST . More...
class	PLMD::crystallization::Gradient
	Provides the keyword GRADIENT . More...
class	PLMD::gridtools::GridToXYZ
	Provides the keyword GRID_TO_XYZ . More...
class	PLMD::generic::Group
	Provides the keyword GROUP . More...
class	PLMD::colvar::Gyration
	Provides the keyword GYRATION . More...
class	PLMD::adjmat::HBondMatrix
	Provides the keyword HBOND_MATRIX . More...
class	PLMD::pamm::HBPammHydrogens
	Provides the keyword HBPAMM_SH . More...
class	PLMD::pamm::HBPammMatrix
	Provides the keyword HBPAMM_MATRIX . More...
class	PLMD::analysis::Histogram
	Provides the keyword HISTOGRAM . More...
class	PLMD::generic::Include
	Provides the keyword INCLUDE . More...
class	PLMD::multicolvar::InPlaneDistances
	Provides the keyword INPLANEDISTANCES . More...
class	PLMD::gridtools::IntegrateGrid
	Provides the keyword INTEGRATE_GRID . More...
class	PLMD::crystallization::InterMolecularTorsions
	Provides the keyword INTERMOLECULARTORSIONS . More...
class	PLMD::gridtools::InterpolateGrid
	Provides the keyword INTERPOLATE_GRID . More...
class	PLMD::isdb::JCoupling
	Provides the keyword <a href="../../user-doc/html/_"_j_c_o_u_p_l_i_n_g.html"> "JCOUPLING . More...
class	PLMD::analysis::LandmarkStaged
	Provides the keyword LANDMARK_SELECT_STAGED . More...
class	PLMD::setup::Load
	Provides the keyword LOAD . More...
class	LOCAL_Q3
	Provides the keyword LOCAL_Q3 . More...
class	LOCAL_Q4
	Provides the keyword LOCAL_Q4 . More...
class	LOCAL_Q6
	Provides the keyword LOCAL_Q6 . More...
class	PLMD::multicolvar::LocalAverage
	Provides the keyword LOCAL_AVERAGE . More...
class	PLMD::function::LocalEnsemble
	Provides the keyword LOCALENSEMBLE . More...
class	PLMD::logmfd::LogMFD
	class for LogMFD parameters, variables and subroutines. More...
class	PLMD::maze::Loss
	Provides the keyword <a href="../../user-doc/html/_"_m_a_z_e__l_o_s_s.html"> "MAZE_LOSS . More...
class	PLMD::bias::LWalls
	Provides the keyword LOWER_WALLS . More...
class	PLMD::manyrestraints::LWalls
	Provides the keyword LWALLS . More...
class	PLMD::adjmat::MatrixColumnSums
	Provides the keyword COLUMNSUMS . More...
class	PLMD::adjmat::MatrixRowSums
	Provides the keyword ROWSUMS . More...
class	PLMD::bias::MaxEnt
	Provides the keyword MAXENT . More...
class	PLMD::maze::Memetic
	Provides the keyword <a href="../../user-doc/html/_"_m_a_z_e__m_e_m_e_t_i_c__s_a_m_p_l_i_n_g.html"> "MAZE_MEMETIC_SAMPLING . More...
class	PLMD::membranefusion::memFusionP
	Provides the keyword <a href="../../user-doc/html/_"_m_e_m_f_u_s_i_o_n_p.html"> "MEMFUSIONP . More...
class	PLMD::bias::MetaD
	Provides the keyword METAD . More...
class	PLMD::isdb::Metainference
	Provides the keyword METAINFERENCE . More...
class	PLMD::crystallization::MoleculeOrientation
	Provides the keyword MOLECULES . More...
class	PLMD::crystallization::MoleculePlane
	Provides the keyword PLANES . More...
class	MolInfo
	Provides the keyword MOLINFO . More...
class	PLMD::bias::MovingRestraint
	Provides the keyword MOVINGRESTRAINT . More...
class	PLMD::multicolvar::MultiColvarCombine
	Provides the keyword MCOLV_COMBINE . More...
class	PLMD::multicolvar::MultiColvarDensity
	Provides the keyword MULTICOLVARDENS . More...
class	PLMD::multicolvar::MultiColvarProduct
	Provides the keyword MCOLV_PRODUCT . More...
class	PLMD::colvar::MultiRMSD
	Provides the keyword MULTI_RMSD . More...
class	PLMD::isdb::NOE
	Provides the keyword NOE . More...
class	PLMD::multicolvar::NumberOfLinks
	Provides the keyword NLINKS . More...
class	PLMD::opes::OPESexpanded
	Provides the keyword OPES_EXPANDED . More...
class	OPESmetad_c
	Provides the keyword OPES_METAD . More...
class	OPESmetad_e
	Provides the keyword OPES_METAD_EXPLORE . More...
class	PLMD::ves::Opt_Adam
	Provides the keyword OPT_ADAM . More...
class	PLMD::ves::Opt_BachAveragedSGD
	Provides the keyword OPT_AVERAGED_SGD . More...
class	PLMD::ves::Opt_Dummy
	Provides the keyword OPT_DUMMY . More...
class	PLMD::ves::Opt_RobbinsMonroSGD
	Provides the keyword OPT_ROBBINS_MONRO_SGD . More...
class	PLMD::maze::OptimizerBias
	Provides the keyword <a href="../../user-doc/html/_"_m_a_z_e__o_p_t_i_m_i_z_e_r__b_i_a_s.html"> "MAZE_OPTIMIZER_BIAS . More...
class	PLMD::ves::OutputBasisFunctions
	Provides the keyword VES_OUTPUT_BASISFUNCTIONS . More...
class	PLMD::adjmat::OutputCluster
	Provides the keyword OUTPUT_CLUSTER . More...
class	PLMD::analysis::OutputColvarFile
	Provides the keyword OUTPUT_ANALYSIS_DATA_TO_COLVAR . More...
class	PLMD::ves::OutputFesBias
	Provides the keyword VES_OUTPUT_FES . More...
class	PLMD::dimred::OutputPCAProjection
	Provides the keyword OUTPUT_PCA_PROJECTION . More...
class	PLMD::analysis::OutputPDBFile
	Provides the keyword OUTPUT_ANALYSIS_DATA_TO_PDB . More...
class	PLMD::ves::OutputTargetDistribution
	Provides the keyword VES_OUTPUT_TARGET_DISTRIBUTION . More...
class	PLMD::pamm::PAMM
	Provides the keyword PAMM . More...
class	PLMD::secondarystructure::ParabetaRMSD
	Provides the keyword PARABETARMSD . More...
class	PLMD::mapping::Path
	Provides the keyword PATH . More...
class	PLMD::colvar::PathMSD
	Provides the keyword PATHMSD . More...
class	PLMD::bias::PBMetaD
	Provides the keyword PBMETAD . More...
class	PLMD::dimred::PCA
	Provides the keyword PCA . More...
class	PLMD::colvar::PCARMSD
	Provides the keyword PCARMSD . More...
class	PLMD::mapping::PCAVars
	Provides the keyword PCAVARS . More...
class	PLMD::function::Piecewise
	Provides the keyword PIECEWISE . More...
class	PLMD::piv::PIV
	Provides the keyword PIV . More...
class	PLMD::generic::Plumed
	Provides the keyword PLUMED . More...
class	PLMD::crystallization::PolymerAngles
	Provides the keyword POLYMER_ANGLES . More...
class	PLMD::colvar::Position
	Provides the keyword POSITION . More...
class	PLMD::isdb::PRE
	Provides the keyword PRE . More...
class	PLMD::generic::Print
	Provides the keyword PRINT . More...
class	PLMD::analysis::PrintDissimilarityMatrix
	Provides the keyword PRINT_DISSIMILARITY_MATRIX . More...
class	PLMD::colvar::ProjectionOnAxis
	Provides the keyword PROJECTION_ON_AXIS . More...
class	PLMD::dimred::ProjectNonLandmarkPoints
	Provides the keyword PROJECT_ALL_ANALYSIS_DATA . More...
class	PLMD::colvar::PropertyMap
	Provides the keyword PROPERTYMAP . More...
class	PLMD::mapping::PropertyMap
	Provides the keyword GPROPERTYMAP . More...
class	PLMD::colvar::Puckering
	Provides the keyword PUCKERING . More...
class	PytorchModel
	Provides the keyword PYTORCH_MODEL . More...
class	PLMD::crystallization::Q3
	Provides the keyword Q3 . More...
class	PLMD::crystallization::Q4
	Provides the keyword Q4 . More...
class	PLMD::crystallization::Q6
	Provides the keyword Q6 . More...
class	PLMD::maze::Random_Acceleration_MD
	Provides the keyword <a href="../../user-doc/html/_"_m_a_z_e__r_a_n_d_o_m__a_c_c_e_l_e_r_a_t_i_o_n__m_d.html"> "MAZE_RANDOM_ACCELERATION_MD . More...
class	PLMD::maze::Random_Walk
	Provides the keyword <a href="../../user-doc/html/_"_m_a_z_e__r_a_n_d_o_m__w_a_l_k.html"> "MAZE_RANDOM_WALK . More...
class	PLMD::generic::RandomExchanges
	Provides the keyword RANDOM_EXCHANGES . More...
class	PLMD::isdb::RDC
	Provides the keyword RDC . More...
class	PLMD::generic::Read
	Provides the keyword READ . More...
class	PLMD::analysis::ReadAnalysisFrames
	Provides the keyword COLLECT_FRAMES . More...
class	PLMD::analysis::ReadDissimilarityMatrix
	Provides the keyword READ_DISSIMILARITY_MATRIX . More...
class	PLMD::isdb::Rescale
	Provides the keyword RESCALE . More...
class	PLMD::analysis::ReselectLandmarks
	Provides the keyword RESELECT_LANDMARKS . More...
class	PLMD::generic::ResetCell
	Provides the keyword RESET_CELL . More...
class	PLMD::setup::Restart
	Provides the keyword RESTART . More...
class	PLMD::bias::Restraint
	Provides the keyword RESTRAINT . More...
class	PLMD::bias::ReweightBias
	Provides the keyword REWEIGHT_BIAS . More...
class	PLMD::bias::ReweightMetad
	Provides the keyword REWEIGHT_METAD . More...
class	PLMD::bias::ReweightTemperaturePressure
	Provides the keyword REWEIGHT_TEMP_PRESS . More...
class	PLMD::bias::ReweightWham
	Provides the keyword REWEIGHT_WHAM . More...
class	PLMD::colvar::RMSD
	Provides the keyword RMSD . More...
class	PLMD::s2cm::S2ContactModel
	Provides the keyword S2CM . More...
class	PLMD::sasa::SASA_HASEL
	Provides the keyword SASA_HASEL . More...
class	PLMD::sasa::SASA_LCPO
	Provides the keyword SASA_LCPO . More...
class	PLMD::isdb::SAXS
	Provides the keyword SAXS . More...
class	PLMD::isdb::Select
	Provides the keyword SELECT . More...
class	PLMD::isdb::Selector
	Provides the keyword SELECTOR . More...
class	PLMD::analysis::SelectRandomFrames
	Provides the keyword LANDMARK_SELECT_RANDOM . More...
class	PLMD::analysis::SelectWithStride
	Provides the keyword LANDMARK_SELECT_STRIDE . More...
class	PLMD::crystallization::SimpleCubic
	Provides the keyword SIMPLECUBIC . More...
class	PLMD::maze::Simulated_Annealing
	Provides the keyword <a href="../../user-doc/html/_"_m_a_z_e__s_i_m_u_l_a_t_e_d__a_n_n_e_a_l_i_n_g.html"> "MAZE_SIMULATED_ANNEALING . More...
class	PLMD::dimred::SketchMap
	Provides the keyword SKETCH_MAP . More...
class	PLMD::dimred::SketchMapConjGrad
	Provides the keyword SKETCHMAP_CONJGRAD . More...
class	PLMD::dimred::SketchMapPointwise
	Provides the keyword SKETCHMAP_POINTWISE . More...
class	PLMD::dimred::SketchMapRead
	Provides the keyword SKETCHMAP_READ . More...
class	PLMD::dimred::SketchMapSmacof
	Provides the keyword SKETCHMAP_SMACOF . More...
class	PLMD::crystallization::SMAC
	Provides the keyword SMAC . More...
class	PLMD::adjmat::SMACMatrix
	Provides the keyword SMAC_MATRIX . More...
class	PLMD::dimred::SmacofMDS
	Provides the keyword SMACOF_MDS . More...
class	PLMD::function::Sort
	Provides the keyword SORT . More...
class	PLMD::adjmat::Sprint
	Provides the keyword SPRINT . More...
class	PLMD::function::Stats
	Provides the keyword STATS . More...
class	PLMD::maze::Steered_MD
	Provides the keyword <a href="../../user-doc/html/_"_m_a_z_e__s_t_e_e_r_e_d__m_d.html"> "MAZE_STEERED_MD . More...
class	PLMD::function::Target
	Provides the keyword TARGET . More...
class	PLMD::ves::TD_Chi
	Provides the keyword TD_CHI . More...
class	PLMD::ves::TD_ChiSquared
	Provides the keyword TD_CHISQUARED . More...
class	PLMD::ves::TD_Custom
	Provides the keyword TD_CUSTOM . More...
class	PLMD::ves::TD_Exponential
	Provides the keyword TD_EXPONENTIAL . More...
class	PLMD::ves::TD_ExponentiallyModifiedGaussian
	Provides the keyword TD_EXPONENTIALLY_MODIFIED_GAUSSIAN . More...
class	PLMD::ves::TD_Gaussian
	Provides the keyword TD_GAUSSIAN . More...
class	PLMD::ves::TD_GeneralizedExtremeValue
	Provides the keyword TD_GENERALIZED_EXTREME_VALUE . More...
class	PLMD::ves::TD_GeneralizedNormal
	Provides the keyword TD_GENERALIZED_NORMAL . More...
class	PLMD::ves::TD_Grid
	Provides the keyword TD_GRID . More...
class	PLMD::ves::TD_LinearCombination
	Provides the keyword TD_LINEAR_COMBINATION . More...
class	PLMD::ves::TD_Multicanonical
	Provides the keyword TD_MULTICANONICAL . More...
class	PLMD::ves::TD_MultithermalMultibaric
	Provides the keyword TD_MULTITHERMAL_MULTIBARIC . More...
class	PLMD::ves::TD_ProductCombination
	Provides the keyword TD_PRODUCT_COMBINATION . More...
class	PLMD::ves::TD_ProductDistribution
	Provides the keyword TD_PRODUCT_DISTRIBUTION . More...
class	PLMD::ves::TD_Uniform
	Provides the keyword TD_UNIFORM . More...
class	PLMD::ves::TD_VonMises
	Provides the keyword TD_VONMISES . More...
class	PLMD::ves::TD_WellTempered
	Provides the keyword TD_WELLTEMPERED . More...
class	PLMD::colvar::Template
	Provides the keyword TEMPLATE . More...
class	PLMD::crystallization::Tetrahedral
	Provides the keyword TETRAHEDRAL . More...
class	PLMD::generic::Time
	Provides the keyword TIME . More...
class	PLMD::adjmat::TopologyMatrix
	Provides the keyword TOPOLOGY_MATRIX . More...
class	PLMD::colvar::Torsion
	Provides the keyword TORSION . More...
class	PLMD::multicolvar::Torsions
	Provides the keyword TORSIONS . More...
class	PLMD::setup::Units
	Provides the keyword UNITS . More...
class	PLMD::generic::UpdateIf
	Provides the keyword UPDATE_IF . More...
class	PLMD::bias::UWalls
	Provides the keyword UPPER_WALLS . More...
class	PLMD::manyrestraints::UWalls
	Provides the keyword UWALLS . More...
class	PLMD::ves::VesDeltaF
	Provides the keyword VES_DELTA_F . More...
class	PLMD::ves::VesLinearExpansion
	Provides the keyword VES_LINEAR_EXPANSION . More...
class	PLMD::colvar::Volume
	Provides the keyword VOLUME . More...
class	PLMD::multicolvar::VolumeAround
	Provides the keyword AROUND . More...
class	PLMD::multicolvar::VolumeCavity
	Provides the keyword CAVITY . More...
class	PLMD::multicolvar::VolumeInCylinder
	Provides the keyword INCYLINDER . More...
class	PLMD::multicolvar::VolumeInEnvelope
	Provides the keyword INENVELOPE . More...
class	PLMD::multicolvar::VolumeInSphere
	Provides the keyword INSPHERE . More...
class	PLMD::multicolvar::VolumeTetrapore
	Provides the keyword TETRAHEDRALPORE . More...
class	PLMD::analysis::WhamHistogram
	Provides the keyword WHAM_HISTOGRAM . More...
class	PLMD::analysis::WhamWeights
	Provides the keyword WHAM_WEIGHTS . More...
class	PLMD::generic::WholeMolecules
	Provides the keyword WHOLEMOLECULES . More...
class	PLMD::generic::WrapAround
	Provides the keyword WRAPAROUND . More...
class	PLMD::multicolvar::XAngles
	Provides the keyword XANGLES . More...
class	PLMD::multicolvar::XDistances
	Provides the keyword XDISTANCES . More...
class	PLMD::multicolvar::XYDistances
	Provides the keyword XYDISTANCES . More...
class	PLMD::multicolvar::XYTorsion
	Provides the keyword XYTORSIONS . More...

Detailed Description

Classes which implement directive that we used in the plumed input file.

Most of these classes are only used to provide a new feature which will be available from the plumed input file. As such, they are typically not reused in other places of the code. For this reason, almost all of them are directly provided into an implementation file (.cpp), and have no accociated header file (.h). A notable exceptions is PLMD::SetupMolInfo, which needs to be accessed directly from other classes.

Each of these classes provides one directive for the plumed input file. This list is built automatically based on the PLUMED_REGISTER_ACTION macro.