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Here is a list of all class members with links to the classes they belong to:
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label :
PLMD::Action
label_ :
PLMD::maze::Optimizer
,
PLMD::ves::CoeffsBase
,
PLMD::ves::LinearBasisSetExpansion
labels :
PLMD::colvar::PathMSDBase
lagmultfname :
PLMD::bias::MaxEnt
lagmultOfile_ :
PLMD::bias::MaxEnt
lambda :
PLMD::bias::MaxEnt
,
PLMD::colvar::PathMSDBase
,
PLMD::function::FuncPathGeneral
,
PLMD::function::FuncPathMSD
,
PLMD::mapping::PathBase
,
PLMD::molfile::trx_hdr
,
PLMD::SwitchingFunction
lambda0_ :
PLMD::opes::ECVlinear
lambda_ :
PLMD::crystallization::EnvironmentSimilarity
,
PLMD::ves::TD_Exponential
lambdad :
PLMD::xdrfile::t_trnheader
lambdaf :
PLMD::xdrfile::t_trnheader
lambdas_ :
PLMD::ves::TD_ExponentiallyModifiedGaussian
landmark_indices :
PLMD::analysis::LandmarkSelectionBase
LandmarkSelectionBase() :
PLMD::analysis::LandmarkSelectionBase
LandmarkStaged() :
PLMD::analysis::LandmarkStaged
lap :
PLMD::Stopwatch::Watch
lastError :
PLMD::DLLoader
lastStart :
PLMD::Stopwatch::Watch
lastupdate_ :
PLMD::NeighborList
lboundDerivative() :
PLMD::HistogramBead
lcell_lists :
PLMD::LinkCells
lcell_starts :
PLMD::LinkCells
lcell_tots :
PLMD::LinkCells
LCPOparam :
PLMD::isdb::SAXS
,
PLMD::sasa::SASA_LCPO
learn_replica :
PLMD::bias::MaxEnt
LeftParen :
PLMD::lepton::ParseToken
len :
PLMD::mapping::PathReparameterization
len_bi :
PLMD::multicolvar::VolumeCavity
,
PLMD::multicolvar::VolumeTetrapore
len_cross :
PLMD::multicolvar::VolumeCavity
,
PLMD::multicolvar::VolumeTetrapore
len_perp :
PLMD::multicolvar::VolumeCavity
,
PLMD::multicolvar::VolumeTetrapore
length :
PLMD::Units
lengthN2 :
PLMD::isdb::CS2Backbone::RingInfo
lengthNV :
PLMD::isdb::CS2Backbone::RingInfo
lengthString :
PLMD::Units
lenunit :
PLMD::generic::DumpAtoms
,
PLMD::gridtools::FindContour
,
PLMD::gridtools::GridToXYZ
,
PLMD::multicolvar::DumpMultiColvar
,
PLMD::multicolvar::VolumeCavity
,
PLMD::multicolvar::VolumeTetrapore
lepton_func :
PLMD::SwitchingFunction
lepton_ref :
PLMD::function::Custom
,
PLMD::SwitchingFunction
lepton_ref_deriv :
PLMD::function::Custom
,
PLMD::SwitchingFunction
leptontype :
PLMD::SwitchingFunction
leptonx2 :
PLMD::SwitchingFunction
LessThan() :
PLMD::vesselbase::LessThan
LEU :
PLMD::isdb::CS2Backbone
,
PLMD::isdb::SAXS
LEU_BB :
PLMD::isdb::SAXS
LEU_SC1 :
PLMD::isdb::SAXS
ligand_com :
PLMD::funnel::FUNNEL_PS
LIKE_GAUSS :
PLMD::isdb::Metainference
,
PLMD::isdb::MetainferenceBase
LIKE_LOGN :
PLMD::isdb::Metainference
,
PLMD::isdb::MetainferenceBase
limitmax :
PLMD::FlexibleBin
limitmin :
PLMD::FlexibleBin
line :
PLMD::Action
,
PLMD::ActionOptions
,
PLMD::CLToolOptions
,
PLMD::Exception::Location
,
PLMD::ReferenceConfiguration
,
PLMD::vesselbase::Vessel
LinearBasisSet :
PLMD::ves::CoeffsBase
LinearBasisSetExpansion() :
PLMD::ves::LinearBasisSetExpansion
linearInterpolation() :
PLMD::ves::GridLinearInterpolation
linemin() :
PLMD::MinimiseBase< FCLASS >
linePrefix :
PLMD::OFile
linesearch() :
PLMD::RootFindingBase< FCLASS >
link() :
PLMD::FileBase
,
PLMD::OFile
link_cutoff :
PLMD::LinkCells
linkAction() :
PLMD::ves::BasisFunctions
,
PLMD::ves::CoeffsBase
,
PLMD::ves::LinearBasisSetExpansion
,
PLMD::ves::TargetDistribution
,
PLMD::ves::TD_LinearCombination
,
PLMD::ves::TD_ProductCombination
,
PLMD::ves::TD_ProductDistribution
linkBiasGrid() :
PLMD::ves::TargetDistribution
,
PLMD::ves::TD_LinearCombination
,
PLMD::ves::TD_ProductCombination
,
PLMD::ves::TD_ProductDistribution
linkBiasWithoutCutoffGrid() :
PLMD::ves::TargetDistribution
,
PLMD::ves::TD_LinearCombination
,
PLMD::ves::TD_ProductCombination
,
PLMD::ves::TD_ProductDistribution
LinkCells() :
PLMD::LinkCells
linkcells :
PLMD::multicolvar::MultiColvarBase
linked :
PLMD::OFile
linkFesGrid() :
PLMD::ves::TargetDistribution
,
PLMD::ves::TD_LinearCombination
,
PLMD::ves::TD_ProductCombination
,
PLMD::ves::TD_ProductDistribution
linkOptimizer() :
PLMD::ves::VesBias
linkVesBias() :
PLMD::ves::BasisFunctions
,
PLMD::ves::CoeffsBase
,
PLMD::ves::LinearBasisSetExpansion
,
PLMD::ves::TargetDistribution
,
PLMD::ves::TD_LinearCombination
,
PLMD::ves::TD_ProductCombination
,
PLMD::ves::TD_ProductDistribution
list() :
PLMD::CLToolRegister
llread() :
PLMD::IFile
llwrite() :
PLMD::OFile
lm_inv_ :
PLMD::eds::EDS
lm_mixing_par_ :
PLMD::eds::EDS
LMEM :
PLMD::membranefusion::fusionPoreExpansionP
,
PLMD::membranefusion::fusionPoreNucleationP
,
PLMD::membranefusion::memFusionP
Load() :
PLMD::setup::Load
load() :
PLMD::DLLoader
,
PLMD::PlumedMain
loaded :
PLMD::PlumedHandle
loadReference() :
PLMD::function::FuncPathGeneral
local :
PLMD::PlumedHandle
local_buffer :
PLMD::vesselbase::StoreDataVessel
local_dsyevr() :
PLMD::TensorGenericAux
local_search() :
PLMD::maze::Memetic
local_search_off() :
PLMD::maze::Memetic
local_search_on() :
PLMD::maze::Memetic
local_search_on_ :
PLMD::maze::Memetic
local_search_rate_ :
PLMD::maze::Memetic
local_search_type_ :
PLMD::maze::Memetic
LocalAverage :
PLMD::multicolvar::AtomValuePack
,
PLMD::multicolvar::LocalAverage
localDeltaBias :
PLMD::GREX
LocalEnsemble() :
PLMD::function::LocalEnsemble
LocalSteinhardt() :
PLMD::crystallization::LocalSteinhardt< T >
localUNow :
PLMD::GREX
localUSwap :
PLMD::GREX
Location() :
PLMD::Exception::Location
lockContributors() :
PLMD::vesselbase::ActionWithVessel
lockRequestArguments :
PLMD::ActionWithArguments
lockRequestAtoms :
PLMD::ActionAtomistic
lockRequests() :
PLMD::Action
,
PLMD::ActionAtomistic
,
PLMD::ActionWithArguments
,
PLMD::analysis::AnalysisBase
,
PLMD::isdb::EMMI
,
PLMD::isdb::MetainferenceBase
,
PLMD::mapping::Mapping
,
PLMD::mapping::PCAVars
,
PLMD::vesselbase::ActionWithAveraging
LOG :
PLMD::lepton::Operation
Log() :
PLMD::lepton::Operation::Log
log :
PLMD::Action
,
PLMD::function::FilesHandler
,
PLMD::PlumedMain
,
PLMD::Stopwatch
,
PLMD::TargetDist
log2() :
PLMD::ves::VesTools
log_fwd :
PLMD::PlumedMain
log_golden2 :
PLMD::gridtools::GridVessel
log_targetdist_grid_pntr_ :
PLMD::ves::LinearBasisSetExpansion
,
PLMD::ves::TargetDistribution
logActivity :
PLMD::generic::Debug
logAllValuesAndDerivatives() :
PLMD::Grid
logClose :
PLMD::colvar::PathMSDBase
logdet :
PLMD::Matrix< T >
LogMFD() :
PLMD::logmfd::LogMFD
logRequestedAtoms :
PLMD::generic::Debug
logTargetDistGrid() :
PLMD::ves::TargetDistribution
logTemperingSpecs() :
PLMD::bias::MetaD
logweights :
PLMD::analysis::ReadAnalysisFrames
logweights_ :
PLMD::eds::EDS
loopEnd() :
PLMD::mapping::PathReparameterization
Loss() :
PLMD::maze::Loss
loss_ :
PLMD::maze::Optimizer
low_sf :
PLMD::adjmat::TopologyMatrix
lowb :
PLMD::HistogramBead
lowdf :
PLMD::dimred::SketchMapBase
lower :
PLMD::DRMSD
,
PLMD::generic::UpdateIf
lower_only_ :
PLMD::opes::ECVumbrellasFile
,
PLMD::opes::ECVumbrellasLine
lowerboundary :
PLMD::drr::UIestimator::n_matrix
,
PLMD::drr::UIestimator::n_vector< T >
,
PLMD::drr::UIestimator::UIestimator
lowerlimits :
PLMD::analysis::Committor
Lowest() :
PLMD::vesselbase::Lowest
lowI_ :
PLMD::bias::MetaD
,
PLMD::bias::PBMetaD
,
PLMD::BiasRepresentation
,
PLMD::function::FuncSumHills
lowmem :
PLMD::vesselbase::ActionWithVessel
ls() :
PLMD::Tools
lsearch() :
PLMD::RootFindingBase< FCLASS >
lsfmax :
PLMD::adjmat::TopologyMatrix
ltmp_ind :
PLMD::multicolvar::VolumeInEnvelope
ltmp_pos :
PLMD::multicolvar::VolumeInEnvelope
luus_jaakola() :
PLMD::maze::Memetic
LWalls() :
PLMD::bias::LWalls
,
PLMD::manyrestraints::LWalls
lweight :
PLMD::vesselbase::ActionWithAveraging
lweights :
PLMD::analysis::LandmarkSelectionBase
LYS :
PLMD::isdb::CS2Backbone
,
PLMD::isdb::SAXS
LYS_BB :
PLMD::isdb::SAXS
LYS_SC1 :
PLMD::isdb::SAXS
LYS_SC2 :
PLMD::isdb::SAXS
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1.17.0