PLMD::adjmat::AdjacencyMatrixVessel Member List

This is the complete list of members for PLMD::adjmat::AdjacencyMatrixVessel, including all inherited members.

action	PLMD::vesselbase::Vessel	private
ActionWithInputMatrix class	PLMD::adjmat::AdjacencyMatrixVessel	friend
activateIndices(ActionWithVessel *)	PLMD::vesselbase::StoreDataVessel	inlinevirtual
active_der	PLMD::vesselbase::StoreDataVessel	private
addActionThatUses(ActionWithVessel *actionThatUses)	PLMD::vesselbase::StoreDataVessel
AdjacencyMatrixBase class	PLMD::adjmat::AdjacencyMatrixVessel	friend
AdjacencyMatrixVessel(const vesselbase::VesselOptions &)	PLMD::adjmat::AdjacencyMatrixVessel	explicit
applyForce(std::vector< double > &) override	PLMD::vesselbase::StoreDataVessel	inlinevirtual
bufsize	PLMD::vesselbase::Vessel	private
bufstart	PLMD::vesselbase::Vessel	protected
calculate(const unsigned &current, MultiValue &myvals, std::vector< double > &buffer, std::vector< unsigned > &der_index) const override	PLMD::vesselbase::StoreDataVessel	virtual
checkRead()	PLMD::vesselbase::Vessel
completeSetup(const unsigned &, const unsigned &)	PLMD::vesselbase::StoreDataVessel	protected
description() override	PLMD::vesselbase::StoreDataVessel	inlinevirtual
error(const std::string &errmsg)	PLMD::vesselbase::Vessel	protected
finish(const std::vector< double > &buffer) override	PLMD::vesselbase::StoreDataVessel	virtual
finished_read	PLMD::vesselbase::Vessel	private
function	PLMD::adjmat::AdjacencyMatrixVessel	private
getAction() const	PLMD::vesselbase::Vessel	inlineprotected
getAllInput()	PLMD::vesselbase::Vessel	protected
getCutoffForConnection() const	PLMD::adjmat::AdjacencyMatrixVessel
getDataUser(const unsigned &)	PLMD::vesselbase::StoreDataVessel	inline
getLabel() const	PLMD::vesselbase::Vessel
getLocalDerivative(const unsigned &ibuf)	PLMD::vesselbase::StoreDataVessel	protected
getMatrixAction()	PLMD::adjmat::AdjacencyMatrixVessel
getMatrixIndices(const unsigned &code, unsigned &i, unsigned &j) const	PLMD::adjmat::AdjacencyMatrixVessel
getName() const	PLMD::vesselbase::Vessel
getNLTolerance() const	PLMD::vesselbase::Vessel	inlineprotected
getNodePosition(const unsigned &taskIndex) const	PLMD::adjmat::AdjacencyMatrixVessel
getNumberOfColumns() const	PLMD::adjmat::AdjacencyMatrixVessel
getNumberOfComponents() const	PLMD::vesselbase::StoreDataVessel	inline
getNumberOfDataUsers() const	PLMD::vesselbase::StoreDataVessel	inline
getNumberOfDerivatives(const unsigned &)	PLMD::vesselbase::StoreDataVessel
getNumberOfDerivativeSpacesPerComponent() const	PLMD::vesselbase::StoreDataVessel	inlineprotected
getNumberOfRows() const	PLMD::adjmat::AdjacencyMatrixVessel
getNumberOfStoredValues() const	PLMD::vesselbase::StoreDataVessel	inlinevirtual
getNumericalLabel() const	PLMD::vesselbase::Vessel	inlineprotected
getSizeOfBuffer() const	PLMD::vesselbase::Vessel	inlineprotected
getSizeOfDerivativeList() const	PLMD::vesselbase::StoreDataVessel	inline
getStoreIndex(const unsigned &) const	PLMD::vesselbase::StoreDataVessel	inline
getStoreIndexFromMatrixIndices(const unsigned &ielem, const unsigned &jelem) const	PLMD::adjmat::AdjacencyMatrixVessel
getTemporyMultiValue(const unsigned &ind)	PLMD::vesselbase::StoreDataVessel
getTolerance() const	PLMD::vesselbase::Vessel	inlineprotected
getTrueIndex(const unsigned &) const	PLMD::vesselbase::StoreDataVessel	inline
hasderiv	PLMD::vesselbase::StoreDataVessel	private
hbonds	PLMD::adjmat::AdjacencyMatrixVessel	private
isSymmetric() const	PLMD::adjmat::AdjacencyMatrixVessel
keywords	PLMD::vesselbase::Vessel	private
line	PLMD::vesselbase::Vessel	private
local_buffer	PLMD::vesselbase::StoreDataVessel	private
matrixElementIsActive(const unsigned &ielem, const unsigned &jelem) const	PLMD::adjmat::AdjacencyMatrixVessel
max_lowmem_stash	PLMD::vesselbase::StoreDataVessel	private
my_tmp_vals	PLMD::vesselbase::StoreDataVessel	private
mylabel	PLMD::vesselbase::Vessel	private
myname	PLMD::vesselbase::Vessel	private
nodesAreConnected(const unsigned &iatom, const unsigned &jatom) const	PLMD::adjmat::AdjacencyMatrixVessel
nspace	PLMD::vesselbase::StoreDataVessel	private
numlab	PLMD::vesselbase::Vessel	private
parse(const std::string &key, T &t)	PLMD::vesselbase::Vessel	protected
parseFlag(const std::string &key, bool &t)	PLMD::vesselbase::Vessel	protected
parseVector(const std::string &key, std::vector< T > &t)	PLMD::vesselbase::Vessel	protected
prepare()	PLMD::vesselbase::Vessel	inlinevirtual
recalculateStoredQuantity(const unsigned &myelm, MultiValue &myvals)	PLMD::vesselbase::StoreDataVessel	inline
registerKeywords(Keywords &keys)	PLMD::adjmat::AdjacencyMatrixVessel	static
resize() override	PLMD::vesselbase::StoreDataVessel	virtual
resizeBuffer(const unsigned &n)	PLMD::vesselbase::Vessel	inlineprotected
resizeTemporyMultiValues(const unsigned &nvals)	PLMD::vesselbase::StoreDataVessel
retrieveAdjacencyLists(std::vector< unsigned > &nneigh, Matrix< unsigned > &adj_list)	PLMD::adjmat::AdjacencyMatrixVessel
retrieveDerivatives(const unsigned &myelem, const bool &normed, MultiValue &myvals)	PLMD::vesselbase::StoreDataVessel
retrieveEdgeList(unsigned &nedge, std::vector< std::pair< unsigned, unsigned > > &edge_list)	PLMD::adjmat::AdjacencyMatrixVessel
retrieveMatrix(DynamicList< unsigned > &myactive_elements, Matrix< double > &mymatrix)	PLMD::adjmat::AdjacencyMatrixVessel
retrieveSequentialValue(const unsigned &myelem, const bool &normed, std::vector< double > &values) const	PLMD::vesselbase::StoreDataVessel
retrieveValueWithIndex(const unsigned &myelem, const bool &normed, std::vector< double > &values) const	PLMD::vesselbase::StoreDataVessel
retrieveWeightWithIndex(const unsigned &myelem) const	PLMD::vesselbase::StoreDataVessel
setActiveValsAndDerivatives(const std::vector< unsigned > &der_index)	PLMD::vesselbase::StoreDataVessel
setBufferStart(unsigned &start)	PLMD::vesselbase::Vessel	inlinevirtual
setHardCutoffOnWeight(const double &mytol)	PLMD::vesselbase::StoreDataVessel
setLocalDerivative(const unsigned &ibuf, const double &val)	PLMD::vesselbase::StoreDataVessel	protected
StoreDataVessel(const VesselOptions &)	PLMD::vesselbase::StoreDataVessel	explicit
storeDerivatives(const unsigned &, MultiValue &myvals, std::vector< double > &, std::vector< unsigned > &) const	PLMD::vesselbase::StoreDataVessel	protected
storedValueIsActive(const unsigned &iatom) const	PLMD::vesselbase::StoreDataVessel	inline
storeValues(const unsigned &, MultiValue &, std::vector< double > &) const	PLMD::vesselbase::StoreDataVessel	protected
symmetric	PLMD::adjmat::AdjacencyMatrixVessel	private
tmp_index	PLMD::vesselbase::StoreDataVessel	private
transformDerivatives(const unsigned &current, MultiValue &myvals, MultiValue &bvals)	PLMD::vesselbase::Vessel	inlinevirtual
transformName(const std::string &name)	PLMD::vesselbase::Vessel	static
undirectedGraph() const	PLMD::adjmat::AdjacencyMatrixVessel
userActions	PLMD::vesselbase::StoreDataVessel	private
usingLowMem()	PLMD::vesselbase::StoreDataVessel	inlineprotected
vecsize	PLMD::vesselbase::StoreDataVessel	private
Vessel(const VesselOptions &da)	PLMD::vesselbase::Vessel	explicit
weightHasDerivatives()	PLMD::vesselbase::StoreDataVessel	inlineprotected
~Vessel()	PLMD::vesselbase::Vessel	inlinevirtual