This is the complete list of members for PLMD::RMSDCoreData, including all inherited members.

alEqDis	PLMD::RMSDCoreData	private
align	PLMD::RMSDCoreData	private
calcPositionsCenter()	PLMD::RMSDCoreData	inline
calcReferenceCenter()	PLMD::RMSDCoreData	inline
cpositions	PLMD::RMSDCoreData	private
cpositions_is_calculated	PLMD::RMSDCoreData	private
cpositions_is_removed	PLMD::RMSDCoreData	private
creference	PLMD::RMSDCoreData	private
creference_is_calculated	PLMD::RMSDCoreData	private
creference_is_removed	PLMD::RMSDCoreData	private
d	PLMD::RMSDCoreData	private
ddist_drotation	PLMD::RMSDCoreData	private
ddist_drr01	PLMD::RMSDCoreData	private
displace	PLMD::RMSDCoreData	private
dist	PLMD::RMSDCoreData	private
distanceIsMSD	PLMD::RMSDCoreData	private
doCoreCalc(bool safe, bool alEqDis, bool only_rotation=false)	PLMD::RMSDCoreData
doCoreCalcWithCloseStructure(bool safe, bool alEqDis, const Tensor &rotationPosClose, const Tensor &rotationRefClose, std::array< std::array< Tensor, 3 >, 3 > &drotationPosCloseDrr01)	PLMD::RMSDCoreData
drotation_drr01	PLMD::RMSDCoreData	private
eigenvals	PLMD::RMSDCoreData	private
eigenvecs	PLMD::RMSDCoreData	private
getAlignedPositionsToReference()	PLMD::RMSDCoreData
getAlignedReferenceToPositions()	PLMD::RMSDCoreData
getCenteredPositions()	PLMD::RMSDCoreData
getCenteredReference()	PLMD::RMSDCoreData
getDDistanceDPositions()	PLMD::RMSDCoreData
getDDistanceDReference()	PLMD::RMSDCoreData
getDDistanceDReferenceSOMA()	PLMD::RMSDCoreData
getDistance(bool squared)	PLMD::RMSDCoreData
getDRotationDPositions(bool inverseTransform=false)	PLMD::RMSDCoreData
getDRotationDReference(bool inverseTransform=false)	PLMD::RMSDCoreData
getDRotationDRr01() const	PLMD::RMSDCoreData
getPositionsCenter()	PLMD::RMSDCoreData
getPositionsCenterIsRemoved()	PLMD::RMSDCoreData	inline
getReferenceCenter()	PLMD::RMSDCoreData
getReferenceCenterIsRemoved()	PLMD::RMSDCoreData	inline
getRotationMatrixPositionsToReference()	PLMD::RMSDCoreData
getRotationMatrixReferenceToPositions()	PLMD::RMSDCoreData
hasDistance	PLMD::RMSDCoreData	private
isInitialized	PLMD::RMSDCoreData	private
positions	PLMD::RMSDCoreData	private
reference	PLMD::RMSDCoreData	private
retrieve_only_rotation	PLMD::RMSDCoreData	private
RMSDCoreData(const std::vector< double > &a, const std::vector< double > &d, const std::vector< Vector > &p, const std::vector< Vector > &r, Vector &cp, Vector &cr)	PLMD::RMSDCoreData	inline
RMSDCoreData(const std::vector< double > &a, const std::vector< double > &d, const std::vector< Vector > &p, const std::vector< Vector > &r)	PLMD::RMSDCoreData	inline
rotation	PLMD::RMSDCoreData	private
rr00	PLMD::RMSDCoreData	private
rr11	PLMD::RMSDCoreData	private
safe	PLMD::RMSDCoreData	private
setPositionsCenter(Vector v)	PLMD::RMSDCoreData	inline
setPositionsCenterIsRemoved(bool t)	PLMD::RMSDCoreData	inline
setReferenceCenter(Vector v)	PLMD::RMSDCoreData	inline
setReferenceCenterIsRemoved(bool t)	PLMD::RMSDCoreData	inline