Zoltan2_findUniqueGids.hpp

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#ifndef _ZOLTAN2_FINDUNIQUEGIDS_HPP_
#define _ZOLTAN2_FINDUNIQUEGIDS_HPP_
 
#include <Zoltan2_Standards.hpp>
#include <vector>
 
#include <Tpetra_MultiVector.hpp>
#include <Tpetra_Vector.hpp>
 
#include <Zoltan2_TPLTraits.hpp>
 
#include <zoltan_dd.h>
#include <zoltan_dd_const.h>
 
namespace Zoltan2
{
 
template <typename gno_t>
size_t findUniqueGidsCommon(
  size_t num_keys,
  int num_gid,
  ZOLTAN_ID_PTR ddkeys,
  char *ddnewgids,
  MPI_Comm mpicomm
)
{
  int num_lid = 0;  // Local IDs not needed
  int debug_level = 0;
  int num_user = sizeof(gno_t);
 
  Zoltan_DD_Struct *dd = NULL;
  Zoltan_DD_Create(&dd, mpicomm, num_gid, num_lid, num_user, num_keys, 
                   debug_level);
 
  ZOLTAN_ID_PTR ddnotneeded = NULL;  // Local IDs not needed
  Zoltan_DD_Update(dd, ddkeys, ddnotneeded, ddnewgids, NULL, int(num_keys));

  // Insert unique GIDs for DD entries in User data here.
 
  // Get value of first gid on this rank
  typedef long long mpi_t;
  mpi_t nDDEntries = (mpi_t)(dd->nodecnt);
  mpi_t firstIdx;
  MPI_Scan(&nDDEntries, &firstIdx, 1, MPI_LONG_LONG, MPI_SUM, mpicomm);
  firstIdx -= nDDEntries;  // do not include this rank's entries in prefix sum
 
  // Loop over all directory entries, updating their userdata with updated gid
  DD_NodeIdx cnt = 0;
 
  for (DD_NodeIdx i = 0; i < dd->nodelistlen; i++) {
    DD_Node *ptr = &(dd->nodelist[i]);
    if (!(ptr->free)) {
      char *userchar = (char*)(ptr->gid + (dd->gid_length + dd->lid_length));
      gno_t *newgid = (gno_t*) userchar;
      *newgid = gno_t(firstIdx + cnt);
      cnt++;
    }
  }

  // Retrieve the global numbers and put in the result gids vector
  Zoltan_DD_Find(dd, ddkeys, ddnotneeded, ddnewgids, NULL, int(num_keys), NULL);
 
  Zoltan_DD_Destroy(&dd);
 
  mpi_t nUnique = 0;
  MPI_Allreduce(&nDDEntries, &nUnique, 1, MPI_LONG_LONG, MPI_SUM, mpicomm);
 
  return size_t(nUnique);
}

template <typename lno_t, typename gno_t>
size_t findUniqueGids(
  Tpetra::MultiVector<gno_t, lno_t, gno_t> &keys,
  Tpetra::Vector<gno_t, lno_t, gno_t> &gids
)
{
  // Input:  Tpetra MultiVector of keys; key length = numVectors()
  //         May contain duplicate keys within a processor.
  //         May contain duplicate keys across processors.
  // Input:  Empty Tpetra Vector with same map for holding the results
  // Output: Filled gids vector, containing unique global numbers for
  //         each unique key.  Global numbers are in range [0,#UniqueKeys).
 
  size_t num_keys = keys.getLocalLength();
  size_t num_entries = keys.getNumVectors();
 
#ifdef HAVE_ZOLTAN2_MPI
  MPI_Comm mpicomm = Teuchos::getRawMpiComm(*(keys.getMap()->getComm()));
#else
  // Zoltan's siMPI will be used here
  {
    int flag;
    MPI_Initialized(&flag);
    if (!flag) {
      int narg = 0;
      char **argv = NULL;
      MPI_Init(&narg, &argv);
    }
  }
  MPI_Comm mpicomm = MPI_COMM_WORLD;  // Will get MPI_COMM_WORLD from siMPI
#endif
 
  int num_gid = TPL_Traits<ZOLTAN_ID_PTR,gno_t>::NUM_ID * num_entries;
  int num_user = sizeof(gno_t);
 
  // Buffer the keys for Zoltan_DD
  Teuchos::ArrayRCP<const gno_t> *tmpKeyVecs =
           new Teuchos::ArrayRCP<const gno_t>[num_entries];
  for (size_t v = 0; v < num_entries; v++) tmpKeyVecs[v] = keys.getData(v);
 
  ZOLTAN_ID_PTR ddkeys = new ZOLTAN_ID_TYPE[num_gid * num_keys];
  size_t idx = 0;
  for (size_t i = 0; i < num_keys; i++) {
    for (size_t v = 0; v < num_entries; v++) {
      ZOLTAN_ID_PTR ddkey = &(ddkeys[idx]);
      TPL_Traits<ZOLTAN_ID_PTR,gno_t>::ASSIGN(ddkey, tmpKeyVecs[v][i]);
      idx += TPL_Traits<ZOLTAN_ID_PTR,gno_t>::NUM_ID;
    }
  }
  delete [] tmpKeyVecs;
 
  // Allocate memory for the result
  char *ddnewgids = new char[num_user * num_keys];
  
  // Compute the new GIDs
  size_t nUnique = findUniqueGidsCommon<gno_t>(num_keys, num_gid,
                                               ddkeys, ddnewgids, mpicomm);
 
  // Copy the result into the output vector
  gno_t *result = (gno_t *)ddnewgids;
  for (size_t i = 0; i < num_keys; i++)
    gids.replaceLocalValue(i, result[i]);
 
  // Clean up
  delete [] ddkeys;
  delete [] ddnewgids;
 
  return nUnique;
}

template <typename key_t, typename gno_t>
size_t findUniqueGids(
  std::vector<key_t> &keys,
  std::vector<gno_t> &gids,
  const Teuchos::Comm<int> &comm
)
{
  // Input:  Vector of keys; key length = key_t.size()
  //         Each key must have the same size.  std::array<gno_t, N> is
  //         an example of a good key_t.
  //         May contain duplicate keys within a processor.
  //         May contain duplicate keys across processors.
  // Input:  Empty vector for holding the results
  // Output: Filled gids vector, containing unique global numbers for
  //         each unique key.  Global numbers are in range [0,#UniqueKeys).
  //
  // Note:  This code uses the Zoltan Distributed Directory to assign the
  //        unique global numbers.  Right now, it hacks into the Zoltan_DD
  //        data structures.  If we like this approach, we can add some
  //        elegance to the Zoltan_DD, allowing operations internal to the
  //        directory.
 
  size_t num_keys = keys.size();
  key_t dummy;
  size_t num_entries = dummy.size();
 
#ifdef HAVE_ZOLTAN2_MPI
  MPI_Comm mpicomm = Teuchos::getRawMpiComm(comm);
#else
  // Zoltan's siMPI will be used here
  {
    int flag;
    MPI_Initialized(&flag);
    if (!flag) {
      int narg = 0;
      char **argv = NULL;
      MPI_Init(&narg, &argv);
    }
  }
  MPI_Comm mpicomm = MPI_COMM_WORLD;  // Will get MPI_COMM_WORLD from siMPI
#endif
 
  int num_gid = TPL_Traits<ZOLTAN_ID_PTR,gno_t>::NUM_ID * num_entries;
  int num_user = sizeof(gno_t);
 
  // Buffer the keys for Zoltan_DD
  ZOLTAN_ID_PTR ddkeys = new ZOLTAN_ID_TYPE[num_gid * num_keys];
  size_t idx = 0;
  for (size_t i = 0; i < num_keys; i++) {
    for (size_t v = 0; v < num_entries; v++) {
      ZOLTAN_ID_PTR ddkey = &(ddkeys[idx]);
      TPL_Traits<ZOLTAN_ID_PTR,gno_t>::ASSIGN(ddkey, keys[i][v]);
      idx += TPL_Traits<ZOLTAN_ID_PTR,gno_t>::NUM_ID;
    }
  }
 
  // Allocate memory for the result
  char *ddnewgids = new char[num_user * num_keys];
 
  // Compute the new GIDs
  size_t nUnique = findUniqueGidsCommon<gno_t>(num_keys, num_gid,
                                               ddkeys, ddnewgids, mpicomm);
 
  // Copy the result into the output vector
  gno_t *result = (gno_t *)ddnewgids;
  for (size_t i = 0; i < num_keys; i++)
    gids[i] = result[i];
 
  // Clean up
  delete [] ddkeys;
  delete [] ddnewgids;
 
  return nUnique;
}
 
 
}                   // namespace Zoltan2
#endif