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Zoltan2_RebalanceColoring.hpp
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// @HEADER
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//
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// ***********************************************************************
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//
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// Zoltan2: A package of combinatorial algorithms for scientific computing
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// Copyright 2012 Sandia Corporation
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//
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// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
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// the U.S. Government retains certain rights in this software.
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//
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// Redistribution and use in source and binary forms, with or without
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// modification, are permitted provided that the following conditions are
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// met:
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//
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// 1. Redistributions of source code must retain the above copyright
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// notice, this list of conditions and the following disclaimer.
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//
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// 2. Redistributions in binary form must reproduce the above copyright
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// notice, this list of conditions and the following disclaimer in the
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// documentation and/or other materials provided with the distribution.
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//
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// 3. Neither the name of the Corporation nor the names of the
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// contributors may be used to endorse or promote products derived from
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// this software without specific prior written permission.
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//
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// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
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// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
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// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
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// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
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// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
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// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
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// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
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// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
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// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
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// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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//
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// Questions? Contact Karen Devine (kddevin@sandia.gov)
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// Erik Boman (egboman@sandia.gov)
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// Siva Rajamanickam (srajama@sandia.gov)
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//
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// ***********************************************************************
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//
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// @HEADER
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#ifndef _ZOLTAN2_REBALANCECOLORING_HPP_
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#define _ZOLTAN2_REBALANCECOLORING_HPP_
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#include <
Zoltan2_Standards.hpp
>
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// Given a valid coloring of a graph, rebalance the colors
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// such that either:
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// (a) color classes are as balanced as possible, or
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// (b) every color class has at least minSize vertices.
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// This function can be called as a post-processing after any initial
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// coloring.
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// This is a greedy heuristic so there is no guarantee of success,
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// though in practice we believe it will work well.
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int
rebalanceColoring
(
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const
lno_t
nVtx,
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ArrayView<const lno_t> edgeIds,
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ArrayView<const offset_t> offsets,
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ArrayRCP<int> colors,
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const
int
balanceColors,
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const
lno_t
minSize
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)
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{
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#ifndef INCLUDE_ZOLTAN2_EXPERIMENTAL
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Z2_THROW_EXPERIMENTAL
(
"Zoltan2 rebalanceColoring is experimental and not tested"
);
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#else
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// Experimental: Not tested yet!
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//
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// Count size of each color class.
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// No vertex weights, may add in future.
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lno_t
maxColor = 0;
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Teuchos::Array<lno_t> colorSize(nVtx,0);
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for
(
lno_t
i=0; i < nVtx; i++){
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if
(colors[i] > maxColor)
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maxColor = colors[i];
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}
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for
(
lno_t
i=0; i < nVtx; i++){
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colorSize[colors[i]]++;
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}
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lno_t
targetSize = 0;
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if
(balanceColors > 0)
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targetSize = nVtx/maxColor;
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else
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targetSize = minSize;
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// Vertex-centric version: Loop over vertices
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// and move it to different color if needed.
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Teuchos::Array<int> forbidden(maxDegree+2, 0);
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for
(
lno_t
i=0; i < nVtx; i++){
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if
(colorSize[colors[i]] > targetSize){
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// Find first available color that is not full yet
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for
(offset_t j=offsets[i]; j<offsets[i+1]; j++){
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lno_t
nbor = edgeIds[j];
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if
(colors[nbor] > 0){
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// Neighbors' colors are forbidden
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forbidden[colors[nbor]] = i;
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}
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}
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// Pick first (smallest) underfull color > 0.
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// If no such color, just keep colors[i].
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int
newcolor = colors[i];
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for
(
int
c=1; c <= maxColor; c++){
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if
((forbidden[c] != i) && (colorSize[c]<targetSize)){
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newcolor = c;
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break
;
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}
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}
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// Move vertex i to underfull color.
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colorSize[colors[i]]--;
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colorSize[newcolor]++;
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colors[i] = newcolor;
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}
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}
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#endif
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}
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#endif
Z2_THROW_EXPERIMENTAL
#define Z2_THROW_EXPERIMENTAL(mystr)
Throw an error when experimental code is requested but not compiled.
Definition
Zoltan2_Exceptions.hpp:121
rebalanceColoring
int rebalanceColoring(const lno_t nVtx, ArrayView< const lno_t > edgeIds, ArrayView< const offset_t > offsets, ArrayRCP< int > colors, const int balanceColors, const lno_t minSize)
Definition
Zoltan2_RebalanceColoring.hpp:58
Zoltan2_Standards.hpp
Gathering definitions used in software development.
lno_t
map_t::local_ordinal_type lno_t
Definition
mapRemotes.cpp:17
core
src
algorithms
color
Zoltan2_RebalanceColoring.hpp
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