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numerics
src
Teuchos_MatrixMarket_Raw_Writer.hpp
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// @HEADER
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// ***********************************************************************
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//
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// Tpetra: Templated Linear Algebra Services Package
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// Copyright (2008) Sandia Corporation
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//
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// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
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// the U.S. Government retains certain rights in this software.
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//
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// Redistribution and use in source and binary forms, with or without
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// modification, are permitted provided that the following conditions are
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// met:
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//
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// 1. Redistributions of source code must retain the above copyright
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// notice, this list of conditions and the following disclaimer.
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//
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// 2. Redistributions in binary form must reproduce the above copyright
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// notice, this list of conditions and the following disclaimer in the
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// documentation and/or other materials provided with the distribution.
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//
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// 3. Neither the name of the Corporation nor the names of the
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// contributors may be used to endorse or promote products derived from
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// this software without specific prior written permission.
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//
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// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
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// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
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// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
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// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
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// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
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// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
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// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
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// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
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// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
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// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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//
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// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
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//
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// ************************************************************************
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// @HEADER
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#ifndef __Teuchos_MatrixMarket_Raw_Writer_hpp
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#define __Teuchos_MatrixMarket_Raw_Writer_hpp
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#include <
Teuchos_SetScientific.hpp
>
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#include "
Teuchos_ArrayView.hpp
"
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#include "
Teuchos_ParameterList.hpp
"
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#include <fstream>
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#include <iostream>
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namespace
Teuchos
{
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namespace
MatrixMarket
{
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namespace
Raw
{
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template
<
class
ScalarType,
class
OrdinalType>
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class
Writer
{
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public
:
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void
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writeFile
(
const
std::string&
filename
,
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const
ArrayView<const OrdinalType>
& rowptr,
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const
ArrayView<const OrdinalType>
& colind,
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const
ArrayView<const ScalarType>
& values,
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const
OrdinalType numRows,
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const
OrdinalType numCols)
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{
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std::ofstream out (
filename
.c_str ());
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TEUCHOS_TEST_FOR_EXCEPTION
(! out, std::runtime_error,
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"Failed to open file \""
<<
filename
<<
"\" for writing."
);
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write
(out, rowptr, colind, values, numRows, numCols);
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}
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void
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write
(std::ostream& out,
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const
ArrayView<const OrdinalType>
& rowptr,
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const
ArrayView<const OrdinalType>
& colind,
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const
ArrayView<const ScalarType>
& values,
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const
OrdinalType numRows,
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const
OrdinalType numCols)
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{
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using
std::endl;
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typedef
ScalarTraits<ScalarType>
STS;
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typedef
typename
ArrayView<const OrdinalType>::size_type
size_type;
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// Make the output stream write floating-point numbers in
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// scientific notation. It will politely put the output
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// stream back to its state on input, when this scope
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// terminates.
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Teuchos::SetScientific<ScalarType>
sci (out);
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// Data type string for ScalarType.
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std::string dataType;
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if
(STS::isComplex) {
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dataType =
"complex"
;
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}
else
if
(STS::isOrdinal) {
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dataType =
"integer"
;
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}
else
{
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dataType =
"real"
;
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}
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// Print the Matrix Market banner line. We assume
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// nonsymmetric storage ("general").
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out <<
"%%MatrixMarket matrix coordinate "
<< dataType <<
" general"
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<< endl;
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// // Print comments (the matrix name and / or description).
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// if (matrixName != "") {
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// printAsComment (out, matrixName);
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// }
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// if (matrixDescription != "") {
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// printAsComment (out, matrixDescription);
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// }
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// Write the dimensions of the sparse matrix: (# rows, #
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// columns, # matrix entries (counting duplicates as
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// separate entries)).
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out << numRows <<
" "
<< numCols <<
" "
<< rowptr[numRows] << endl;
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for
(size_type i = 0; i < numRows; ++i) {
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for
(OrdinalType k = rowptr[i]; k < rowptr[i+1]; ++k) {
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const
OrdinalType j = colind[k];
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const
ScalarType& A_ij = values[k];
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// Matrix Market files use 1-based row and column indices.
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out << (i+1) <<
" "
<< (j+1) <<
" "
;
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if
(STS::isComplex) {
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out << STS::real (A_ij) <<
" "
<< STS::imag (A_ij);
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}
else
{
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out << A_ij;
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}
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out << endl;
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}
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}
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}
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};
// end of class Writer
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}
// namespace Raw
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}
// namespace MatrixMarket
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}
// namespace Teuchos
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#endif
// __Teuchos_MatrixMarket_Raw_Writer_hpp
filename
std::string filename
Definition
ParameterList_XMLDuplicateSublists.cpp:50
Teuchos_ArrayView.hpp
Teuchos_ParameterList.hpp
Templated Parameter List class.
Teuchos_SetScientific.hpp
Teuchos::ArrayView
Nonowning array view.
Definition
Teuchos_ArrayViewDecl.hpp:123
Teuchos::ArrayView::size_type
Ordinal size_type
Type representing the number of elements in an ArrayRCP or view thereof.
Definition
Teuchos_ArrayViewDecl.hpp:132
Teuchos::MatrixMarket::Raw::Writer
Write a sparse matrix from raw CSR (compressed sparse row) storage to a Matrix Market file.
Definition
Teuchos_MatrixMarket_Raw_Writer.hpp:67
Teuchos::MatrixMarket::Raw::Writer::write
void write(std::ostream &out, const ArrayView< const OrdinalType > &rowptr, const ArrayView< const OrdinalType > &colind, const ArrayView< const ScalarType > &values, const OrdinalType numRows, const OrdinalType numCols)
Write the sparse matrix to the given output stream.
Definition
Teuchos_MatrixMarket_Raw_Writer.hpp:130
Teuchos::MatrixMarket::Raw::Writer::writeFile
void writeFile(const std::string &filename, const ArrayView< const OrdinalType > &rowptr, const ArrayView< const OrdinalType > &colind, const ArrayView< const ScalarType > &values, const OrdinalType numRows, const OrdinalType numCols)
Write the sparse matrix to the given file.
Definition
Teuchos_MatrixMarket_Raw_Writer.hpp:91
Teuchos::SetScientific
Temporarily make an output stream use scientific notation with sufficient precision.
Definition
Teuchos_SetScientific.hpp:73
TEUCHOS_TEST_FOR_EXCEPTION
#define TEUCHOS_TEST_FOR_EXCEPTION(throw_exception_test, Exception, msg)
Macro for throwing an exception with breakpointing to ease debugging.
Definition
Teuchos_TestForException.hpp:178
Teuchos::MatrixMarket::Raw
Definition
Teuchos_MatrixMarket_Raw_Adder.hpp:62
Teuchos::MatrixMarket
Definition
Teuchos_MatrixMarket_assignScalar.hpp:51
Teuchos
Definition
Teuchos_AbstractFactory.hpp:47
Teuchos::ScalarTraits
This structure defines some basic traits for a scalar field type.
Definition
Teuchos_ScalarTraitsDecl.hpp:91
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