MueLu_ZoltanInterface_def.hpp

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#ifndef MUELU_ZOLTANINTERFACE_DEF_HPP
#define MUELU_ZOLTANINTERFACE_DEF_HPP
 
#include "MueLu_ZoltanInterface_decl.hpp"
#if defined(HAVE_MUELU_ZOLTAN) && defined(HAVE_MPI)
 
#include <Teuchos_Utils.hpp>
#include <Teuchos_DefaultMpiComm.hpp> //TODO: fwd decl.
#include <Teuchos_OpaqueWrapper.hpp>  //TODO: fwd decl.
 
#include "MueLu_Level.hpp"
#include "MueLu_Exceptions.hpp"
#include "MueLu_Monitor.hpp"
 
namespace MueLu {
 
 template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
 RCP<const ParameterList> ZoltanInterface<Scalar, LocalOrdinal, GlobalOrdinal, Node>::GetValidParameterList() const {
    RCP<ParameterList> validParamList = rcp(new ParameterList());
 
    validParamList->set< RCP<const FactoryBase> >("A",           Teuchos::null, "Factory of the matrix A");
    validParamList->set< RCP<const FactoryBase> >("number of partitions", Teuchos::null, "Instance of RepartitionHeuristicFactory.");
    validParamList->set< RCP<const FactoryBase> >("Coordinates", Teuchos::null, "Factory of the coordinates");
 
    return validParamList;
  }
 
 
  template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
  void ZoltanInterface<Scalar, LocalOrdinal, GlobalOrdinal, Node>::DeclareInput(Level& currentLevel) const {
    Input(currentLevel, "A");
    Input(currentLevel, "number of partitions");
    Input(currentLevel, "Coordinates");
  }
 
  template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
  void ZoltanInterface<Scalar, LocalOrdinal, GlobalOrdinal, Node>::Build(Level& level) const {
    FactoryMonitor m(*this, "Build", level);
 
    RCP<Matrix>      A        = Get< RCP<Matrix> >     (level, "A");
    RCP<BlockedCrsMatrix> bA = Teuchos::rcp_dynamic_cast<BlockedCrsMatrix>(A);
    RCP<const Map>   rowMap;
    if(bA != Teuchos::null) {
      // Extracting the full the row map here...
      RCP<const Map> bArowMap = bA->getRowMap();
      RCP<const BlockedMap> bRowMap = Teuchos::rcp_dynamic_cast<const BlockedMap>(bArowMap);
      rowMap = bRowMap->getFullMap();
    } else {
      rowMap = A->getRowMap();
    }
 
    typedef Xpetra::MultiVector<typename Teuchos::ScalarTraits<Scalar>::magnitudeType, LocalOrdinal, GlobalOrdinal, Node> double_multivector_type;
    RCP<double_multivector_type> Coords   = Get< RCP<double_multivector_type> >(level, "Coordinates");
    size_t           dim      = Coords->getNumVectors();
    int numParts = Get<int>(level, "number of partitions");
 
    if (numParts == 1 || numParts == -1) {
      // Running on one processor, so decomposition is the trivial one, all zeros.
      RCP<Xpetra::Vector<GO, LO, GO, NO> > decomposition = Xpetra::VectorFactory<GO, LO, GO, NO>::Build(rowMap, true);
      Set(level, "Partition", decomposition);
      return;
    } else if (numParts == -1) {
      // No repartitioning
      RCP<Xpetra::Vector<GO,LO,GO,NO> > decomposition = Teuchos::null;
      Set(level, "Partition", decomposition);
      return;
    }
 
    float zoltanVersion_;
    Zoltan_Initialize(0, NULL, &zoltanVersion_);
 
    RCP<const Teuchos::MpiComm<int> >            dupMpiComm = rcp_dynamic_cast<const Teuchos::MpiComm<int> >(rowMap->getComm()->duplicate());
    RCP<const Teuchos::OpaqueWrapper<MPI_Comm> > zoltanComm = dupMpiComm->getRawMpiComm();
 
    RCP<Zoltan> zoltanObj_ = rcp(new Zoltan((*zoltanComm)()));  //extract the underlying MPI_Comm handle and create a Zoltan object
    if (zoltanObj_ == Teuchos::null)
      throw Exceptions::RuntimeError("MueLu::Zoltan : Unable to create Zoltan data structure");
 
    // Tell Zoltan what kind of local/global IDs we will use.
    // In our case, each GID is two ints and there are no local ids.
    // One can skip this step if the IDs are just single ints.
    int rv;
    if ((rv = zoltanObj_->Set_Param("num_gid_entries", "1")) != ZOLTAN_OK)
      throw Exceptions::RuntimeError("MueLu::Zoltan::Setup : setting parameter 'num_gid_entries' returned error code " + Teuchos::toString(rv));
    if ((rv = zoltanObj_->Set_Param("num_lid_entries", "0") ) != ZOLTAN_OK)
      throw Exceptions::RuntimeError("MueLu::Zoltan::Setup : setting parameter 'num_lid_entries' returned error code " + Teuchos::toString(rv));
    if ((rv = zoltanObj_->Set_Param("obj_weight_dim", "1") ) != ZOLTAN_OK)
      throw Exceptions::RuntimeError("MueLu::Zoltan::Setup : setting parameter 'obj_weight_dim' returned error code "  + Teuchos::toString(rv));
 
    if (GetVerbLevel() & Statistics1) zoltanObj_->Set_Param("debug_level", "1");
    else                              zoltanObj_->Set_Param("debug_level", "0");
 
    zoltanObj_->Set_Param("num_global_partitions", toString(numParts));
 
    zoltanObj_->Set_Num_Obj_Fn(GetLocalNumberOfRows,      (void *) A.getRawPtr());
    zoltanObj_->Set_Obj_List_Fn(GetLocalNumberOfNonzeros, (void *) A.getRawPtr());
    zoltanObj_->Set_Num_Geom_Fn(GetProblemDimension,      (void *) &dim);
    zoltanObj_->Set_Geom_Multi_Fn(GetProblemGeometry,     (void *) Coords.get());
 
    // Data pointers that Zoltan requires.
    ZOLTAN_ID_PTR import_gids = NULL;  // Global nums of objs to be imported
    ZOLTAN_ID_PTR import_lids = NULL;  // Local indices to objs to be imported
    int   *import_procs       = NULL;  // Proc IDs of procs owning objs to be imported.
    int   *import_to_part     = NULL;  // Partition #s to which imported objs should be assigned.
    ZOLTAN_ID_PTR export_gids = NULL;  // Global nums of objs to be exported
    ZOLTAN_ID_PTR export_lids = NULL;  // local indices to objs to be exported
    int   *export_procs       = NULL;  // Proc IDs of destination procs for objs to be exported.
    int   *export_to_part     = NULL;  // Partition #s for objs to be exported.
    int   num_imported;                // Number of objs to be imported.
    int   num_exported;                // Number of objs to be exported.
    int   newDecomp;                   // Flag indicating whether the decomposition has changed
    int   num_gid_entries;             // Number of array entries in a global ID.
    int   num_lid_entries;
 
    {
      SubFactoryMonitor m1(*this, "Zoltan RCB", level);
      rv = zoltanObj_->LB_Partition(newDecomp, num_gid_entries, num_lid_entries,
                                    num_imported, import_gids, import_lids, import_procs, import_to_part,
                                    num_exported, export_gids, export_lids, export_procs, export_to_part);
      if (rv == ZOLTAN_FATAL)
        throw Exceptions::RuntimeError("Zoltan::LB_Partition() returned error code");
    }
 
    // TODO check that A's row map is 1-1.  Zoltan requires this.
 
    RCP<Xpetra::Vector<GO, LO, GO, NO> > decomposition;
    if (newDecomp) {
      decomposition = Xpetra::VectorFactory<GO, LO, GO, NO>::Build(rowMap, false); // Don't initialize, will be overwritten
      ArrayRCP<GO> decompEntries = decomposition->getDataNonConst(0);
 
      int mypid = rowMap->getComm()->getRank();
      for (typename ArrayRCP<GO>::iterator i = decompEntries.begin(); i != decompEntries.end(); ++i)
        *i = mypid;
 
      LO blockSize = A->GetFixedBlockSize();
      for (int i = 0; i < num_exported; ++i) {
        // We have assigned Zoltan gids to first row GID in the block
        // NOTE: Zoltan GIDs are different from GIDs in the Coordinates vector
        LO  localEl = rowMap->getLocalElement(export_gids[i]);
        int partNum = export_to_part[i];
        for (LO j = 0; j < blockSize; ++j)
          decompEntries[localEl + j] = partNum;
      }
    }
 
    Set(level, "Partition", decomposition);
 
    zoltanObj_->LB_Free_Part(&import_gids, &import_lids, &import_procs, &import_to_part);
    zoltanObj_->LB_Free_Part(&export_gids, &export_lids, &export_procs, &export_to_part);
 
  } //Build()
 
  //-------------------------------------------------------------------------------------------------------------
  // GetLocalNumberOfRows
  //-------------------------------------------------------------------------------------------------------------
 
  template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
  int ZoltanInterface<Scalar, LocalOrdinal, GlobalOrdinal, Node>::GetLocalNumberOfRows(void *data, int *ierr) {
    if (data == NULL) {
      *ierr = ZOLTAN_FATAL;
      return -1;
    }
    Matrix *A = (Matrix*) data;
    *ierr = ZOLTAN_OK;
 
    LO blockSize = A->GetFixedBlockSize();
    TEUCHOS_TEST_FOR_EXCEPTION(blockSize == 0, Exceptions::RuntimeError, "MueLu::Zoltan : Matrix has block size 0.");
 
    return A->getRowMap()->getLocalNumElements() / blockSize;
  } //GetLocalNumberOfRows()
 
  //-------------------------------------------------------------------------------------------------------------
  // GetLocalNumberOfNonzeros
  //-------------------------------------------------------------------------------------------------------------
 
  template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
  void ZoltanInterface<Scalar, LocalOrdinal, GlobalOrdinal, Node>::
  GetLocalNumberOfNonzeros(void *data, int NumGidEntries, int /* NumLidEntries */, ZOLTAN_ID_PTR gids,
                           ZOLTAN_ID_PTR /* lids */, int /* wgtDim */, float *weights, int *ierr) {
    if (data == NULL || NumGidEntries < 1) {
      *ierr = ZOLTAN_FATAL;
      return;
    } else {
      *ierr = ZOLTAN_OK;
    }
 
    Matrix         *A  = (Matrix*) data;
    RCP<const Map> map = A->getRowMap();
 
    LO blockSize = A->GetFixedBlockSize();
    TEUCHOS_TEST_FOR_EXCEPTION(blockSize == 0, Exceptions::RuntimeError, "MueLu::Zoltan : Matrix has block size 0.");
 
    size_t              numElements = map->getLocalNumElements();
    ArrayView<const GO> mapGIDs     = map->getLocalElementList();
 
    if (blockSize == 1) {
      for (size_t i = 0; i < numElements; i++) {
        gids[i]    = as<ZOLTAN_ID_TYPE>(mapGIDs[i]);
        weights[i] = A->getNumEntriesInLocalRow(i);
      }
 
    } else {
      LO numBlockElements = numElements / blockSize;
 
      for (LO i = 0; i < numBlockElements; i++) {
        // Assign zoltan GID to the first row GID in the block
        // NOTE: Zoltan GIDs are different from GIDs in the Coordinates vector
        gids[i]    = as<ZOLTAN_ID_TYPE>(mapGIDs[i*blockSize]);
        weights[i] = 0.0;
        for (LO j = 0; j < blockSize; j++)
          weights[i] += A->getNumEntriesInLocalRow(i*blockSize+j);
      }
    }
 
  }
 
  //-------------------------------------------------------------------------------------------------------------
  // GetProblemDimension
  //-------------------------------------------------------------------------------------------------------------
 
  template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
  int ZoltanInterface<Scalar, LocalOrdinal, GlobalOrdinal, Node>::
  GetProblemDimension(void *data, int *ierr)
  {
    int dim = *((int*)data);
    *ierr = ZOLTAN_OK;
 
    return dim;
  } //GetProblemDimension
 
  //-------------------------------------------------------------------------------------------------------------
  // GetProblemGeometry
  //-------------------------------------------------------------------------------------------------------------
 
  template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
  void ZoltanInterface<Scalar, LocalOrdinal, GlobalOrdinal, Node>::
  GetProblemGeometry(void *data, int /* numGIDEntries */, int /* numLIDEntries */, int numObjectIDs,
                     ZOLTAN_ID_PTR /* gids */, ZOLTAN_ID_PTR /* lids */, int dim, double *coordinates, int *ierr)
  {
    if (data == NULL) {
      *ierr = ZOLTAN_FATAL;
      return;
    }
 
    typedef Xpetra::MultiVector<typename Teuchos::ScalarTraits<Scalar>::coordinateType, LocalOrdinal, GlobalOrdinal, Node> double_multivector_type;
    double_multivector_type *Coords = (double_multivector_type*) data;
 
    if (dim != Teuchos::as<int>(Coords->getNumVectors())) {
      //FIXME I'm assuming dim should be 1, 2, or 3 coming in?!
      *ierr = ZOLTAN_FATAL;
      return;
    }
 
    TEUCHOS_TEST_FOR_EXCEPTION(numObjectIDs != Teuchos::as<int>(Coords->getLocalLength()), Exceptions::Incompatible, "Length of coordinates must be the same as the number of objects");
 
    ArrayRCP<ArrayRCP<const typename Teuchos::ScalarTraits<Scalar>::coordinateType> > CoordsData(dim);
    for (int j = 0; j < dim; ++j)
      CoordsData[j] = Coords->getData(j);
 
    size_t numElements = Coords->getLocalLength();
    for (size_t i = 0; i < numElements; ++i)
      for (int j = 0; j < dim; ++j)
        coordinates[i*dim+j] = (double) CoordsData[j][i];
 
    *ierr = ZOLTAN_OK;
 
  } //GetProblemGeometry
 
} //namespace MueLu
 
#endif //if defined(HAVE_MUELU_ZOLTAN) && defined(HAVE_MPI)
 
#endif // MUELU_ZOLTANINTERFACE_DEF_HPP