MueLu_Zoltan2Interface_def.hpp

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#ifndef MUELU_ZOLTAN2INTERFACE_DEF_HPP
#define MUELU_ZOLTAN2INTERFACE_DEF_HPP
 
#include <sstream>
#include <set>
 
#include "MueLu_Zoltan2Interface_decl.hpp"
#if defined(HAVE_MUELU_ZOLTAN2) && defined(HAVE_MPI)
 
#include <Zoltan2_XpetraMultiVectorAdapter.hpp>
#include <Zoltan2_XpetraCrsGraphAdapter.hpp>
#include <Zoltan2_PartitioningProblem.hpp>
 
#include <Teuchos_Utils.hpp>
#include <Teuchos_DefaultMpiComm.hpp>
#include <Teuchos_OpaqueWrapper.hpp>
 
#include "MueLu_Level.hpp"
#include "MueLu_Exceptions.hpp"
#include "MueLu_Monitor.hpp"
 
namespace MueLu {
 
 template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
 Zoltan2Interface<Scalar, LocalOrdinal, GlobalOrdinal, Node>::Zoltan2Interface() {
    defaultZoltan2Params = rcp(new ParameterList());
    defaultZoltan2Params->set("algorithm",             "multijagged");
    defaultZoltan2Params->set("partitioning_approach", "partition");
 
    // Improve scaling for communication bound algorithms by premigrating
    // coordinates to a subset of processors.
    // For more information, see Github issue #1538
    defaultZoltan2Params->set("mj_premigration_option", 1);
 }
 
 template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
 RCP<const ParameterList> Zoltan2Interface<Scalar, LocalOrdinal, GlobalOrdinal, Node>::GetValidParameterList() const {
    RCP<ParameterList> validParamList = rcp(new ParameterList());
 
    validParamList->set< RCP<const FactoryBase> >   ("A",             Teuchos::null, "Factory of the matrix A");
    validParamList->set< RCP<const FactoryBase> >   ("number of partitions", Teuchos::null, "Instance of RepartitionHeuristicFactory.");
    validParamList->set< RCP<const FactoryBase> >   ("Coordinates",   Teuchos::null, "Factory of the coordinates");
    validParamList->set< RCP<const ParameterList> > ("ParameterList", Teuchos::null, "Zoltan2 parameters");
    validParamList->set< RCP<const FactoryBase> >   ("repartition: heuristic target rows per process", Teuchos::null, "Factory for number of rows per process to use with MultiJagged");
 
    return validParamList;
  }
 
 
  template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
  void Zoltan2Interface<Scalar, LocalOrdinal, GlobalOrdinal, Node>::DeclareInput(Level& currentLevel) const {
    Input(currentLevel, "A");
    Input(currentLevel, "number of partitions");
    const ParameterList& pL = GetParameterList();
    // We do this dance, because we don't want "ParameterList" to be marked as used.
    // Is there a better way?
    Teuchos::ParameterEntry entry = pL.getEntry("ParameterList");
    RCP<const Teuchos::ParameterList> providedList = Teuchos::any_cast<RCP<const Teuchos::ParameterList> >(entry.getAny(false));
    if (providedList != Teuchos::null && providedList->isType<std::string>("algorithm")) {
      const std::string algo = providedList->get<std::string>("algorithm");
      if (algo == "multijagged") {
        Input(currentLevel, "Coordinates");
        Input(currentLevel, "repartition: heuristic target rows per process");
      } else if (algo == "rcb") {
        Input(currentLevel, "Coordinates");
      }
    } else {
      Input(currentLevel, "repartition: heuristic target rows per process");
      Input(currentLevel, "Coordinates");
    }
  }
 
  template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
  void Zoltan2Interface<Scalar, LocalOrdinal, GlobalOrdinal, Node>::Build(Level& level) const {
    FactoryMonitor m(*this, "Build", level);
 
    typedef typename Teuchos::ScalarTraits<SC>::coordinateType real_type;
    typedef typename Xpetra::MultiVector<real_type,LO,GO,NO> RealValuedMultiVector;
 
    RCP<Matrix>    A      = Get<RCP<Matrix> >(level, "A");
    RCP<const Map> rowMap = A->getRowMap();
    LO blkSize  = A->GetFixedBlockSize();
 
    int numParts = Get<int>(level, "number of partitions");
    if (numParts == 1 || numParts == -1) {
      // Single processor, decomposition is trivial: all zeros
      RCP<Xpetra::Vector<GO,LO,GO,NO> > decomposition = Xpetra::VectorFactory<GO, LO, GO, NO>::Build(rowMap, true);
      Set(level, "Partition", decomposition);
      return;
    }/* else if (numParts == -1) {
      // No repartitioning
      RCP<Xpetra::Vector<GO,LO,GO,NO> > decomposition = Teuchos::null; //Xpetra::VectorFactory<GO, LO, GO, NO>::Build(rowMap, true);
      //decomposition->putScalar(Teuchos::as<Scalar>(rowMap->getComm()->getRank()));
      Set(level, "Partition", decomposition);
      return;
    }*/
 
    const ParameterList& pL = GetParameterList();
 
    RCP<const ParameterList> providedList = pL.get<RCP<const ParameterList> >("ParameterList");
    ParameterList Zoltan2Params;
    if (providedList != Teuchos::null)
      Zoltan2Params = *providedList;
 
    // Merge defalt Zoltan2 parameters with user provided
    // If default and user parameters contain the same parameter name, user one is always preferred
    for (ParameterList::ConstIterator param = defaultZoltan2Params->begin(); param != defaultZoltan2Params->end(); param++) {
      const std::string& pName = defaultZoltan2Params->name(param);
      if (!Zoltan2Params.isParameter(pName))
        Zoltan2Params.setEntry(pName, defaultZoltan2Params->getEntry(pName));
    }
    Zoltan2Params.set("num_global_parts", Teuchos::as<int>(numParts));
 
    GetOStream(Runtime0) << "Zoltan2 parameters:\n----------\n" << Zoltan2Params << "----------" << std::endl;
 
    const std::string& algo = Zoltan2Params.get<std::string>("algorithm");
 
    if (algo == "multijagged" || algo == "rcb") {
 
      RCP<RealValuedMultiVector> coords      = Get<RCP<RealValuedMultiVector> >(level, "Coordinates");
      RCP<const Map>    map         = coords->getMap();
      GO                numElements = map->getLocalNumElements();
 
      // Check that the number of local coordinates is consistent with the #rows in A
      TEUCHOS_TEST_FOR_EXCEPTION(rowMap->getLocalNumElements()/blkSize != coords->getLocalLength(), Exceptions::Incompatible,
                                 "Coordinate vector length (" + toString(coords->getLocalLength()) << " is incompatible with number of block rows in A ("
                                 + toString(rowMap->getLocalNumElements()/blkSize) + "The vector length should be the same as the number of mesh points.");
#ifdef HAVE_MUELU_DEBUG
      GO indexBase = rowMap->getIndexBase();
      GetOStream(Runtime0) << "Checking consistence of row and coordinates maps" << std::endl;
      // Make sure that logical blocks in row map coincide with logical nodes in coordinates map
      ArrayView<const GO> rowElements    = rowMap->getLocalElementList();
      ArrayView<const GO> coordsElements = map   ->getLocalElementList();
      for (LO i = 0; i < Teuchos::as<LO>(numElements); i++)
        TEUCHOS_TEST_FOR_EXCEPTION((coordsElements[i]-indexBase)*blkSize + indexBase != rowElements[i*blkSize],
                                   Exceptions::RuntimeError, "i = " << i << ", coords GID = " << coordsElements[i]
                                   << ", row GID = " << rowElements[i*blkSize] << ", blkSize = " << blkSize << std::endl);
#endif
 
      typedef Zoltan2::XpetraMultiVectorAdapter<RealValuedMultiVector>  InputAdapterType;
      typedef Zoltan2::PartitioningProblem<InputAdapterType>   ProblemType;
 
      Array<real_type> weightsPerRow(numElements);
      for (LO i = 0; i < numElements; i++) {
        weightsPerRow[i] = 0.0;
 
        for (LO j = 0; j < blkSize; j++) {
          weightsPerRow[i] += A->getNumEntriesInLocalRow(i*blkSize+j);
        }
      }
     
      // MultiJagged: Grab the target rows per process from the Heuristic to use unless the Zoltan2 list says otherwise
      if(algo == "multijagged" && !Zoltan2Params.isParameter("mj_premigration_coordinate_count")) {
        LO heuristicTargetRowsPerProcess = Get<LO>(level,"repartition: heuristic target rows per process");
        Zoltan2Params.set("mj_premigration_coordinate_count", heuristicTargetRowsPerProcess);
      }
      const bool writeZoltan2DebuggingFiles = Zoltan2Params.get("mj_debug",false);
      Zoltan2Params.remove("mj_debug");
 
      std::vector<int>           strides;
      std::vector<const real_type*> weights(1, weightsPerRow.getRawPtr());
 
      RCP<const Teuchos::MpiComm<int> >            dupMpiComm = rcp_dynamic_cast<const Teuchos::MpiComm<int> >(rowMap->getComm()->duplicate());
      RCP<const Teuchos::OpaqueWrapper<MPI_Comm> > zoltanComm = dupMpiComm->getRawMpiComm();
 
      InputAdapterType adapter(coords, weights, strides);
      RCP<ProblemType> problem(new ProblemType(&adapter, &Zoltan2Params, (*zoltanComm)()));
 
      {
        SubFactoryMonitor m1(*this, "Zoltan2 " + toString(algo), level);
        if (writeZoltan2DebuggingFiles)
          adapter.generateFiles(("mj_debug.lvl_"+std::to_string(level.GetLevelID())).c_str(), *(rowMap->getComm()));
        problem->solve();
      }
 
      RCP<Xpetra::Vector<GO,LO,GO,NO> > decomposition = Xpetra::VectorFactory<GO,LO,GO,NO>::Build(rowMap, false);
      ArrayRCP<GO>                      decompEntries = decomposition->getDataNonConst(0);
 
      const typename InputAdapterType::part_t * parts = problem->getSolution().getPartListView();
 
      for (GO i = 0; i < numElements; i++) {
        int partNum = parts[i];
 
        for (LO j = 0; j < blkSize; j++)
          decompEntries[i*blkSize + j] = partNum;
      }
 
      Set(level, "Partition", decomposition);
 
    } else {
 
      GO numElements = rowMap->getLocalNumElements();
 
      typedef Zoltan2::XpetraCrsGraphAdapter<CrsGraph>  InputAdapterType;
      typedef Zoltan2::PartitioningProblem<InputAdapterType>   ProblemType;
 
      RCP<const Teuchos::MpiComm<int> >            dupMpiComm = rcp_dynamic_cast<const Teuchos::MpiComm<int> >(rowMap->getComm()->duplicate());
      RCP<const Teuchos::OpaqueWrapper<MPI_Comm> > zoltanComm = dupMpiComm->getRawMpiComm();
 
      InputAdapterType adapter(A->getCrsGraph());
      RCP<ProblemType> problem(new ProblemType(&adapter, &Zoltan2Params, (*zoltanComm)()));
 
      {
        SubFactoryMonitor m1(*this, "Zoltan2 " + toString(algo), level);
        problem->solve();
      }
 
      RCP<Xpetra::Vector<GO,LO,GO,NO> > decomposition = Xpetra::VectorFactory<GO,LO,GO,NO>::Build(rowMap, false);
      ArrayRCP<GO>                      decompEntries = decomposition->getDataNonConst(0);
 
      const typename InputAdapterType::part_t * parts = problem->getSolution().getPartListView();
 
      // For blkSize > 1, ignore solution for every row but the first ones in a block.
      for (GO i = 0; i < numElements/blkSize; i++) {
  int partNum = parts[i*blkSize];
  
  for (LO j = 0; j < blkSize; j++)
    decompEntries[i*blkSize + j] = partNum;
      }
 
      Set(level, "Partition", decomposition);
    }
  }
 
} //namespace MueLu
 
#endif //if defined(HAVE_MUELU_ZOLTAN2) && defined(HAVE_MPI)
 
#endif // MUELU_ZOLTAN2INTERFACE_DEF_HPP