fei_Vector_core.cpp

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/*--------------------------------------------------------------------*/
/*    Copyright 2005 Sandia Corporation.                              */
/*    Under the terms of Contract DE-AC04-94AL85000, there is a       */
/*    non-exclusive license for use of this work by or on behalf      */
/*    of the U.S. Government.  Export of this program may require     */
/*    a license from the United States Government.                    */
/*--------------------------------------------------------------------*/
 
#include "fei_fstream.hpp"
 
#include "fei_Vector_core.hpp"
#include "fei_VectorSpace.hpp"
#include "fei_CSVec.hpp"
#include "snl_fei_RecordCollection.hpp"
#include "fei_TemplateUtils.hpp"
#include "fei_impl_utils.hpp"
 
#include <fstream>
#include <sstream>
#undef fei_file
#define fei_file "fei_Vector_core.cpp"
 
#include "fei_ErrMacros.hpp"
 
fei::Vector_core::Vector_core(fei::SharedPtr<fei::VectorSpace> vecSpace,
                              int numLocalEqns)
  : eqnComm_(),
    vecSpace_(vecSpace),
    comm_(vecSpace->getCommunicator()),
    firstLocalOffset_(0),
    lastLocalOffset_(0),
    numLocal_(0),
    work_indices_(),
    work_indices2_(),
    haveFEVector_(false),
    remotelyOwnedProcs_(),
    remotelyOwned_(),
    sendProcs_(),
    recvProcs_(),
    recv_sizes_(),
    recv_chars_(),
    send_chars_(),
    sendRecvProcsNeedUpdated_(true),
    overlapAlreadySet_(false),
    dbgprefix_("Vcore: ")
{
  eqnComm_.reset(new fei::EqnComm(comm_,numLocalEqns));
 
  const std::vector<int>& offsets = eqnComm_->getGlobalOffsets();
  firstLocalOffset_ = offsets[fei::localProc(comm_)];
  lastLocalOffset_ = offsets[fei::localProc(comm_)+1] - 1;
  numLocal_ = lastLocalOffset_ - firstLocalOffset_ + 1;
 
  if (output_level_ >= fei::BRIEF_LOGS && output_stream_ != NULL) {
    FEI_OSTREAM& os = *output_stream_;
    os<<dbgprefix_<<" ctor firstLocal="<<firstLocalOffset_<<", lastLocal="
     <<lastLocalOffset_<<FEI_ENDL;
  }
}
 
fei::Vector_core::~Vector_core()
{
  for(unsigned i=0; i<remotelyOwned_.size(); ++i) {
    delete remotelyOwned_[i];
  }
}
 
void fei::Vector_core::setOverlap(int numRemoteEqns,
                                  const int* remoteEqns)
{
  if (numRemoteEqns == 0 && remoteEqns == NULL) {
    if (overlapAlreadySet_) return;
  }
 
  if (output_level_ >= fei::BRIEF_LOGS && output_stream_ != NULL) {
    FEI_OSTREAM& os = *output_stream_;
    os << dbgprefix_<<"setOverlap"<<FEI_ENDL;
  }
 
  int local_proc = fei::localProc(comm_);
 
  if (numRemoteEqns != 0 && remoteEqns != NULL) {
    for(int i=0; i<numRemoteEqns; ++i) {
      int proc = eqnComm_->getOwnerProc(remoteEqns[i]);
      if (proc == local_proc) continue;
      fei::CSVec* remoteVec = getRemotelyOwned(proc);
      fei::add_entry(*remoteVec, remoteEqns[i], 0.0);
    }
  }
  else {
    std::vector<int> eqns;
    vecSpace_->getIndices_SharedAndOwned(eqns);
 
    for(size_t i=0; i<eqns.size(); ++i) {
      int proc = eqnComm_->getOwnerProc(eqns[i]);
      if (proc == local_proc) continue;
      fei::CSVec* remoteVec = getRemotelyOwned(proc);
 
      fei::add_entry(*remoteVec, eqns[i], 0.0);
    }
  }
 
  overlapAlreadySet_ = true;
  sendRecvProcsNeedUpdated_ = true;
}
 
int fei::Vector_core::scatterToOverlap()
{
  if (fei::numProcs(comm_) == 1 || haveFEVector()) {
    return(0);
  }
 
#ifndef FEI_SER
  if (!overlapAlreadySet_) {
    setOverlap();
  }
 
  //...and now the overlap is whatever is in our remotelyOwned_ vectors.
 
  //first find out which procs we'll be receiving from.
  std::vector<int> recvProcs;
  for(unsigned i=0; i<remotelyOwned_.size(); ++i) {
    if (remotelyOwnedProcs_[i] == fei::localProc(comm_)) continue;
    if (remotelyOwned_[i]->size() == 0) continue;
 
    recvProcs.push_back(remotelyOwnedProcs_[i]);
  }
 
  //find out the send-procs.
  std::vector<int> sendProcs;
  fei::mirrorProcs(comm_, recvProcs, sendProcs);
 
  //declare arrays to send from, and corresponding sizes
  std::vector<std::vector<int> > send_ints(sendProcs.size());
  std::vector<std::vector<double> > send_doubles(sendProcs.size());
  std::vector<int> send_sizes(sendProcs.size());
 
  std::vector<MPI_Request> mpiReqs(sendProcs.size()+recvProcs.size());
  std::vector<MPI_Status> mpiStatuses(sendProcs.size()+recvProcs.size());
  int tag1 = 11111;
  int tag2 = 11112;
 
  //first, the procs we're going to send to, have to let us know
  //how much data we're supposed to send. So we have to receive
  //sizes and then indices from the "send"-procs.
  for(unsigned i=0; i<sendProcs.size(); ++i) {
    MPI_Irecv(&send_sizes[i], 1, MPI_INT, sendProcs[i],
              tag1, comm_, &mpiReqs[i]);
  }
 
  //now we'll send the sizes of our remotely-owned data to the
  //procs that we will be receiving the data from, and also the
  //indices that we want to receive.
  for(unsigned i=0; i<recvProcs.size(); ++i) {
    int proc = recvProcs[i];
 
    fei::CSVec* remoteVec = getRemotelyOwned(proc);
    int size = remoteVec->size();
    MPI_Send(&size, 1, MPI_INT, proc, tag1, comm_);
  }
 
  MPI_Waitall(sendProcs.size(), &mpiReqs[0], &mpiStatuses[0]);
 
  //now resize our send_ints and send_doubles arrays, and post the recvs
  //for indices that we're supposed to pack.
  for(unsigned i=0; i<sendProcs.size(); ++i) {
    int proc = sendProcs[i];
    int size = send_sizes[i];
    send_ints[i].resize(size);
    MPI_Irecv(&(send_ints[i][0]), size, MPI_INT, proc, tag1,
              comm_, &mpiReqs[i]);
    send_doubles[i].resize(size);
  }
 
  //now send the indices that we want to receive data for.
  for(unsigned i=0; i<recvProcs.size(); ++i) {
    int proc = recvProcs[i];
    fei::CSVec* remoteVec = getRemotelyOwned(proc);
    int size = remoteVec->size();
    int* indices = &(remoteVec->indices())[0];
    MPI_Send(indices, size, MPI_INT, proc, tag1, comm_);
  }
 
  MPI_Waitall(sendProcs.size(), &mpiReqs[0], &mpiStatuses[0]);
 
  //now post our recvs.
  for(unsigned i=0; i<recvProcs.size(); ++i) {
    int proc = recvProcs[i];
    fei::CSVec* remoteVec = getRemotelyOwned(proc);
    int size = remoteVec->size();
    double* coefs = &(remoteVec->coefs())[0];
    MPI_Irecv(coefs, size, MPI_DOUBLE, proc, tag2, comm_, &mpiReqs[i]);
  }
 
  //now pack and send the coefs that the other procs need from us.
  for(unsigned i=0; i<sendProcs.size(); ++i) {
    int proc = sendProcs[i];
 
    int num = send_sizes[i];
    int err = copyOutOfUnderlyingVector(num, &(send_ints[i][0]),
                                        &(send_doubles[i][0]), 0);
    if (err != 0) {
      FEI_COUT << "fei::Vector_core::scatterToOverlap ERROR getting data to send."<<FEI_ENDL;
      return(err);
    }
 
    MPI_Send(&(send_doubles[i][0]), num, MPI_DOUBLE, proc, tag2, comm_);
  }
 
  MPI_Waitall(recvProcs.size(), &mpiReqs[0], &mpiStatuses[0]);
 
#endif  //#ifndef FEI_SER
 
  return(0);
}
 
int fei::Vector_core::copyOut(int numValues,
          const int* indices,
          double* values,
          int vectorIndex) const
{
  for(int i=0; i<numValues; ++i) {
    int ind = indices[i];
 
    int local = ind - firstLocalOffset_;
    if (local < 0 || local >= numLocal_) {
      if (ind < 0) {
        continue;
      }
 
      int proc = eqnComm_->getOwnerProc(ind);
      const fei::CSVec* remoteVec = getRemotelyOwned(proc);
 
      int insertPoint = -1;
      int idx = fei::binarySearch(ind, remoteVec->indices(), insertPoint);
      if (idx < 0) {
        fei::console_out() << "fei::Vector_core::copyOut: proc " << fei::localProc(comm_)
          << ", index " << ind << " not in remotelyOwned_ vec object for proc "
          <<proc<<FEI_ENDL;
        ERReturn(-1);
      }
      else {
        values[i] = remoteVec->coefs()[idx];
      }
    }
    else {
      CHK_ERR( copyOutOfUnderlyingVector(1, &ind, &(values[i]), vectorIndex) );
    }
  }
 
  return(0);
}
 
int fei::Vector_core::giveToVector(int numValues,
               const int* indices,
               const double* values,
               bool sumInto,
               int vectorIndex)
{
  int prev_proc = -1;
  fei::CSVec* prev_vec = NULL;
  for(int i=0; i<numValues; ++i) {
    int ind = indices[i];
    double val = values[i];
 
    if (ind < 0) {
//      throw std::runtime_error("negative index not allowed");
      //preservation of existing behavior: certain Sierra scenarios
      //involve passing negative indices for positions that should be
      //ignored... so we'll continue rather than throwing.
      continue;
    }
    int local = ind - firstLocalOffset_;
    if (local < 0 || local >= numLocal_) {
      int proc = eqnComm_->getOwnerProc(ind);
      if (output_level_ >= fei::BRIEF_LOGS && output_stream_ != NULL) {
        FEI_OSTREAM& os = *output_stream_;
        os << dbgprefix_<<"giveToVector remote["<<proc<<"]("
         <<ind<<","<<val<<")"<<FEI_ENDL;
      }
      fei::CSVec* remoteVec = prev_vec;
      if (proc != prev_proc) {
        remoteVec = getRemotelyOwned(proc);
        prev_vec = remoteVec;
        prev_proc = proc;
      }
 
      if (sumInto) {
        fei::add_entry( *remoteVec, ind, val);
      }
      else {
        fei::put_entry( *remoteVec, ind, val);
      }
    }
    else {
      int err = giveToUnderlyingVector(1, &ind, &val, sumInto, vectorIndex);
      if (err != 0) {
        fei::console_out() << "giveToVector sumIn ERROR, ind: " << ind
          << ", val: " << val << FEI_ENDL;
        ERReturn(-1);
      }
    }
  }
 
  return(0);
}
 
int fei::Vector_core::assembleFieldData(int fieldID,
              int idType,
              int numIDs,
              const int* IDs,
              const double* data,
              bool sumInto,
              int vectorIndex)
{
  if (vecSpace_.get() == NULL) ERReturn(-1);
 
  int fieldSize = vecSpace_->getFieldSize(fieldID);
 
  work_indices_.resize(numIDs*fieldSize);
  int* indicesPtr = &work_indices_[0];
 
  CHK_ERR( vecSpace_->getGlobalIndices(numIDs, IDs, idType, fieldID,
          indicesPtr) );
 
  CHK_ERR( giveToVector(numIDs*fieldSize, indicesPtr, data, sumInto, vectorIndex) );
 
  return(0);
}
 
int fei::Vector_core::assembleFieldDataLocalIDs(int fieldID,
              int idType,
              int numIDs,
              const int* localIDs,
              const double* data,
              bool sumInto,
              int vectorIndex)
{
  if (vecSpace_.get() == NULL) ERReturn(-1);
 
  int fieldSize = vecSpace_->getFieldSize(fieldID);
 
  work_indices_.resize(numIDs*fieldSize);
  int* indicesPtr = &work_indices_[0];
 
  CHK_ERR( vecSpace_->getGlobalIndicesLocalIDs(numIDs, localIDs, idType, fieldID,
          indicesPtr) );
 
  CHK_ERR( giveToVector(numIDs*fieldSize, indicesPtr, data, sumInto, vectorIndex) );
 
  return(0);
}
 
void fei::Vector_core::pack_send_buffers(const std::vector<int>& sendProcs,
                       const std::vector<fei::CSVec*>& remotelyOwned,
                       std::vector<std::vector<char> >& send_chars,
                       bool resize_buffer,
                       bool zeroRemotelyOwnedAfterPacking)
{
  for(size_t i=0; i<sendProcs.size(); ++i) {
    int proc = sendProcs[i];
    fei::CSVec* remoteVec = getRemotelyOwned(proc);
    fei::impl_utils::pack_indices_coefs(remoteVec->indices(),
                       remoteVec->coefs(), send_chars[i], resize_buffer);
 
    if (zeroRemotelyOwnedAfterPacking) {
      fei::set_values(*remoteVec, 0.0);
    }
  }
}
 
void fei::Vector_core::setCommSizes()
{
#ifndef FEI_SER
  sendProcs_.clear();
  //first create the list of procs we'll be sending to.
  for(unsigned i=0; i<remotelyOwned_.size(); ++i) {
    if (remotelyOwnedProcs_[i] == fei::localProc(comm_)) continue;
    if (remotelyOwned_[i]->size() == 0) continue;
 
    sendProcs_.push_back(remotelyOwnedProcs_[i]);
  }
 
  std::vector<int> tmpSendProcs;
  vecSpace_->getSendProcs(tmpSendProcs);
  for(size_t i=0; i<tmpSendProcs.size(); ++i) {
    bool found = false;
    for(size_t j=0; j<sendProcs_.size(); ++j) {
      if (sendProcs_[j] == tmpSendProcs[i]) {
        found = true;
        break;
      }
      if (sendProcs_[j] > tmpSendProcs[i]) {
        sendProcs_.insert(sendProcs_.begin()+j, tmpSendProcs[i]);
        found = true;
        break;
      }
    }
    if (!found) sendProcs_.push_back(tmpSendProcs[i]);
  }
 
  recvProcs_.clear();
  fei::mirrorProcs(comm_, sendProcs_, recvProcs_);
 
  std::vector<MPI_Request> mpiReqs;
  int tag1 = 11111;
 
  send_chars_.resize(sendProcs_.size());
  recv_chars_.resize(recvProcs_.size());
 
  bool resize_buffer = true;
  bool zero_remotely_owned_after_packing = false;
  pack_send_buffers(sendProcs_, remotelyOwned_, send_chars_,
                    resize_buffer, zero_remotely_owned_after_packing);
 
  recv_sizes_.resize(recvProcs_.size());
  mpiReqs.resize(recvProcs_.size());
 
  //post the recvs for the sizes.
  for(size_t i=0; i<recvProcs_.size(); ++i) {
    int proc = recvProcs_[i];
    MPI_Irecv(&recv_sizes_[i], 1, MPI_INT, proc,
              tag1, comm_, &mpiReqs[i]);
  }
 
  //send the sizes of data we'll be sending.
  for(unsigned i=0; i<sendProcs_.size(); ++i) {
    int proc = sendProcs_[i];
    int size = send_chars_[i].size();
    MPI_Send(&size, 1, MPI_INT, proc, tag1, comm_);
  }
 
  for(size_t i=0; i<recvProcs_.size(); ++i) {
    int index;
    MPI_Status status;
    MPI_Waitany(mpiReqs.size(), &mpiReqs[0], &index, &status);
 
    recv_chars_[index].resize(recv_sizes_[index]);
  }
 
  sendRecvProcsNeedUpdated_ = false;
#endif
}
 
int fei::Vector_core::gatherFromOverlap(bool accumulate)
{
  if (fei::numProcs(comm_) == 1 || haveFEVector()) {
    return(0);
  }
 
#ifndef FEI_SER
  std::vector<MPI_Request> mpiReqs;
  int tag1 = 11111;
 
  if (sendRecvProcsNeedUpdated_) {
    setCommSizes();
  }
  
  mpiReqs.resize(recvProcs_.size());
 
  //now post the recvs for the data.
  for(size_t i=0; i<recvProcs_.size(); ++i) {
    MPI_Irecv(&(recv_chars_[i][0]), recv_sizes_[i], MPI_CHAR, recvProcs_[i],
              tag1, comm_, &mpiReqs[i]);
  }
 
  bool resize_buffer = false;
  bool zero_remotely_owned_after_packing = true;
  pack_send_buffers(sendProcs_, remotelyOwned_, send_chars_,
                    resize_buffer, zero_remotely_owned_after_packing);
 
  //now send the outgoing data.
  for(size_t i=0; i<sendProcs_.size(); ++i) {
    int proc = sendProcs_[i];
 
    int size = send_chars_[i].size();
    MPI_Send(&(send_chars_[i][0]), size, MPI_CHAR, proc, tag1, comm_);
  }
 
  int numRecvProcs = recvProcs_.size();
  for(size_t i=0; i<recvProcs_.size(); ++i) {
    int index;
    MPI_Status status;
    MPI_Waitany(numRecvProcs, &mpiReqs[0], &index, &status);
  }
 
  std::vector<int> indices;
  std::vector<double> coefs;
  //now store the data we've received.
  for(size_t i=0; i<recvProcs_.size(); ++i) {
    fei::impl_utils::unpack_indices_coefs(recv_chars_[i], indices, coefs);
    int num = indices.size();
    if (num == 0) continue;
    int err = giveToUnderlyingVector(num, &(indices[0]),
                                     &(coefs[0]), accumulate, 0);
    if (err != 0) {
    //  FEI_COUT << "fei::Vector_core::gatherFromOverlap ERROR storing recvd data" << FEI_ENDL;
      return(err);
    }
  }
 
#endif  //#ifndef FEI_SER
 
  return(0);
}
 
int fei::Vector_core::copyOutFieldData(int fieldID,
             int idType,
             int numIDs,
             const int* IDs,
             double* data,
             int vectorIndex)
{
  if (vecSpace_.get() == NULL) ERReturn(-1);
 
  int fieldSize = vecSpace_->getFieldSize(fieldID);
 
  if (haveFEVector_) {
    snl_fei::RecordCollection* collection = NULL;
    CHK_ERR( vecSpace_->getRecordCollection(idType, collection) );
    int nodeNumber;
    int dofOffset;
    int foffset;
    std::vector<int>& eqnNums = vecSpace_->getEqnNumbers();
    int* vspcEqnPtr = eqnNums.size() > 0 ? &eqnNums[0] : NULL;
 
    int offset = 0;
    for(int i=0; i<numIDs; ++i) {
      fei::Record<int>* node = collection->getRecordWithID(IDs[i]);
      if (node == NULL) {
        ERReturn(-1);
      }
 
      nodeNumber = node->getNumber();
      int* eqnNumbers = vspcEqnPtr+node->getOffsetIntoEqnNumbers();
      int err = node->getFieldMask()->getFieldEqnOffset(fieldID, foffset);
      if (err != 0) {
        offset += fieldSize;
        continue;
      }
      dofOffset = eqnNumbers[foffset] - eqnNumbers[0];
      for(int j=0; j<fieldSize; ++j) {
        CHK_ERR( copyOut_FE(nodeNumber, dofOffset+j, data[offset++]));
      }
    }
  }
  else {
    work_indices_.resize(numIDs*fieldSize*2);
    int* indicesPtr = &work_indices_[0];
 
    CHK_ERR( vecSpace_->getGlobalIndices(numIDs, IDs, idType,
           fieldID, indicesPtr) );
 
    CHK_ERR( copyOut(numIDs*fieldSize, indicesPtr, data) );
  }
 
  return(0);
}
 
int fei::Vector_core::writeToFile(const char* filename,
                                    bool matrixMarketFormat)
{
  int numProcs = fei::numProcs(comm_);
  int localProc =fei::localProc(comm_);
 
  double coef;
 
  static char mmbanner[] = "%%MatrixMarket matrix array real general";
 
  for(int p=0; p<numProcs; ++p) {
    fei::Barrier(comm_);
    if (p != localProc) continue;
 
    FEI_OFSTREAM* outFile = NULL;
    if (p==0) {
      outFile = new FEI_OFSTREAM(filename, IOS_OUT);
      FEI_OFSTREAM& ofref = *outFile;
      if (matrixMarketFormat) {
        ofref << mmbanner << FEI_ENDL;
        ofref << eqnComm_->getGlobalOffsets()[numProcs] << " 1" << FEI_ENDL;
      }
      else {
        ofref << eqnComm_->getGlobalOffsets()[numProcs] << FEI_ENDL;
      }
    }
    else outFile = new FEI_OFSTREAM(filename, IOS_APP);
    FEI_OFSTREAM& ofref = *outFile;
    ofref.setf(IOS_SCIENTIFIC, IOS_FLOATFIELD);
    ofref.precision(13);
 
    for(int i=firstLocalOffset_; i<=lastLocalOffset_; ++i) {
      CHK_ERR( copyOut(1, &i, &coef) );
      if (matrixMarketFormat) {
        ofref << " " << coef << FEI_ENDL;
      }
      else {
        ofref << i << " " << coef << FEI_ENDL;
      }
    }
    
    delete outFile;
  } 
    
  return(0);
}
 
int fei::Vector_core::writeToStream(FEI_OSTREAM& ostrm,
          bool matrixMarketFormat)
{
  int numProcs = fei::numProcs(comm_);
  int local_proc =fei::localProc(comm_);
 
  double coef;
 
  static char mmbanner[] = "%%MatrixMarket matrix array real general";
 
  IOS_FMTFLAGS oldf = ostrm.setf(IOS_SCIENTIFIC, IOS_FLOATFIELD);
  ostrm.precision(13);
 
  for(int proc=0; proc<numProcs; ++proc) {
    fei::Barrier(comm_);
    if (proc != local_proc) continue;
 
    if (proc==0) {
      if (matrixMarketFormat) {
  ostrm << mmbanner << FEI_ENDL;
  ostrm << eqnComm_->getGlobalOffsets()[numProcs] << " 1" << FEI_ENDL;
      }
      else {
  ostrm << eqnComm_->getGlobalOffsets()[numProcs] << FEI_ENDL;
      }
    }
 
    for(size_t p=0; p<remotelyOwned_.size(); ++p) {
      if (remotelyOwnedProcs_[p] > local_proc) continue;
      for(size_t ii=0; ii<remotelyOwned_[p]->size(); ++ii) {
        if (matrixMarketFormat) {
          ostrm << " " << remotelyOwned_[p]->coefs()[ii] << FEI_ENDL;
        }
        else {
          ostrm << " " << remotelyOwned_[p]->indices()[ii] << " "
            << remotelyOwned_[p]->coefs()[ii] << FEI_ENDL;
        }
      }
    }
 
    for(int i=firstLocalOffset_; i<=lastLocalOffset_; ++i) {
      CHK_ERR( copyOut(1, &i, &coef) );
      if (matrixMarketFormat) {
  ostrm << " " << coef << FEI_ENDL;
      }
      else {
  ostrm << " " << i << " " << coef << FEI_ENDL;
      }
    }
 
    for(size_t p=0; p<remotelyOwned_.size(); ++p) {
      if (remotelyOwnedProcs_[p] < local_proc) continue;
      for(size_t ii=0; ii<remotelyOwned_[p]->size(); ++ii) {
        if (matrixMarketFormat) {
          ostrm << " " << remotelyOwned_[p]->coefs()[ii] << FEI_ENDL;
        }
        else {
          ostrm << " " << remotelyOwned_[p]->indices()[ii] << " "
            << remotelyOwned_[p]->coefs()[ii] << FEI_ENDL;
        }
      }
    }
  }
 
  ostrm.setf(oldf, IOS_FLOATFIELD);
 
  return(0);
}