Class VariantProcessor.Builder<A extends VariantProcessor.Accumulator<R>, R>
java.lang.Object
picard.vcf.processor.VariantProcessor.Builder<A,R>
- Enclosing class:
VariantProcessor<RESULT, ACCUMULATOR extends VariantProcessor.Accumulator<RESULT>>
public static class VariantProcessor.Builder<A extends VariantProcessor.Accumulator<R>, R>
extends Object
Simple builder of
VariantProcessors.-
Method Summary
Modifier and TypeMethodDescriptionbuild()combiningResultsBy(VariantProcessor.ResultMerger<R> reducer) static <A extends VariantProcessor.Accumulator<R>, R>
VariantProcessor.Builder<A, R> generatingAccumulatorsBy(VariantProcessor.AccumulatorGenerator<A, R> generator) limitingProcessedRegionsTo(htsjdk.samtools.util.IntervalList intervals) multithreadingBy(int threadCount) withInput(PicardHtsPath... vcfs)
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Method Details
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multithreadingBy
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withInput
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withInput
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limitingProcessedRegionsTo
public VariantProcessor.Builder<A,R> limitingProcessedRegionsTo(htsjdk.samtools.util.IntervalList intervals) -
combiningResultsBy
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generatingAccumulatorsBy
public static <A extends VariantProcessor.Accumulator<R>, R> VariantProcessor.Builder<A,R> generatingAccumulatorsBy(VariantProcessor.AccumulatorGenerator<A, R> generator) -
build
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