Class Fingerprint
- All Implemented Interfaces:
Serializable, Cloneable, Map<HaplotypeBlock, HaplotypeProbabilities>, NavigableMap<HaplotypeBlock, HaplotypeProbabilities>, SequencedMap<HaplotypeBlock, HaplotypeProbabilities>, SortedMap<HaplotypeBlock, HaplotypeProbabilities>
class to represent a genetic fingerprint as a set of HaplotypeProbabilities
objects that give the relative probabilities of each of the possible haplotypes
at a locus.
- See Also:
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Nested Class Summary
Nested classes/interfaces inherited from class AbstractMap
AbstractMap.SimpleEntry<K,V>, AbstractMap.SimpleImmutableEntry<K, V> -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoidstatic Function<FingerprintIdDetails, String> getFingerprintIdDetailsStringFunction(CrosscheckMetric.DataType CROSSCHECK_BY) getInfo()merge(Fingerprint other) Merges the likelihoods from the supplied Fingerprint into the likelihoods for this fingerprint.static Map<FingerprintIdDetails, Fingerprint> mergeFingerprintsBy(Map<FingerprintIdDetails, Fingerprint> fingerprints, Function<FingerprintIdDetails, String> by) Methods inherited from class TreeMap
ceilingEntry, ceilingKey, clear, clone, comparator, compute, computeIfAbsent, computeIfPresent, containsKey, containsValue, descendingKeySet, descendingMap, entrySet, firstEntry, firstKey, floorEntry, floorKey, forEach, get, headMap, headMap, higherEntry, higherKey, keySet, lastEntry, lastKey, lowerEntry, lowerKey, merge, navigableKeySet, pollFirstEntry, pollLastEntry, put, putAll, putFirst, putIfAbsent, putLast, remove, replace, replace, replaceAll, size, subMap, subMap, tailMap, tailMap, valuesMethods inherited from class AbstractMap
equals, hashCode, isEmpty, toStringMethods inherited from interface NavigableMap
reversedMethods inherited from interface SequencedMap
sequencedEntrySet, sequencedKeySet, sequencedValues
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Constructor Details
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Fingerprint
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Method Details
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getSample
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getSource
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getInfo
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getPrintableId
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add
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merge
Merges the likelihoods from the supplied Fingerprint into the likelihoods for this fingerprint. -
getFingerprintIdDetailsStringFunction
public static Function<FingerprintIdDetails, String> getFingerprintIdDetailsStringFunction(CrosscheckMetric.DataType CROSSCHECK_BY) -
mergeFingerprintsBy
public static Map<FingerprintIdDetails, Fingerprint> mergeFingerprintsBy(Map<FingerprintIdDetails, Fingerprint> fingerprints, Function<FingerprintIdDetails, String> by)
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